1 5' 3' | 2 5' 3' | 3 5' 3' |
...atggtttctctgtatgctctcttgatgtttaactgctttgttaccccttctagtccatgctcaatcaattgttgattcttgtacttctgtgcttctgcagGTGCACTCTGCTGCAAATCTGCTCGATAGGAACAATTTGATAAAGTATGACAGGAAAACAGGATACTTCCAGGTTACTGACCTAGGAAGGATTGCTAGTT
species | Oryza sativa |
transcript | LOC_Os02g01740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ccttctagtccatgctcaatcaattgttgattcttgtacttctgtgcttctgcagGTGCACTCTGCTGCAAATCTGCTCGATAGGAACAATTTGATAAAGTATGACAGGAAAACAGGATACTTCCAGGTTACTGACCTAGGAAGGATTGCTAGTT
tgttgat putative branch site (score: 34)
tgcttct putative PPT
aatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggtttctctgtatgctctcttgatgtttaactgctttgttaccccttctagtccatgctcaatcaattgttgattcttgtacttctgtgcttctgcagGTGCACTCTGCTGCAAATCTGCTCGATAGGAACAATTTGATAAAGTATGACAGGAAAACAGGATACTTCCAGGTTACTGACCTAGGAAGGATTGCTAGTT
- - - - - tgtatgc
- - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - ctgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttctg