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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actagatgccaacctcccttgctcatctcatcttattcaaactaaactaaactaaaaataaaaatggagtaactcttctctcttacttctatgttaacagGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCT

Basic information

species Oryza sativa
transcript LOC_Os02g01100.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g01100.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G105192_T04 (Zea mays), 3'ss of exon 1
actagatgccaacctcccttgctcatctcatcttattcaaa--ctaaactaaactaaaaataaaaatggagtaactcttctctcttacttctatgttaacagGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCT
   | ||  |||      | | ||     |  |     |||  |||   || |    |  | ||     | ||  |  |||| ||  |||     |  ||||||| || |||||||||  ||||||||||||||| || || |||||||| |||||||| ||||||||||||||  | |||||||| || |     ||  | 
-tgaaatctcaaaaaatatagatccatcgaaatggccgaaatactagtttacatgtcacgtcaatcacaaata-tttgtctcgctctctttctaatgtacagGCAGTCCATCGACATTCTTAGTAGCGTGCAGTCACCAAATCTGAGCTTCTTGGGAACCCCAACTCTAAGCAGATTGTCCAACTCTTTTCGGGGTAAAACC

upper sequence: LOC_Os02g01100.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G134888_T01 (Zea mays), 3'ss of exon 1
-actagatgccaacctccct-tgctcatctcatcttattcaaactaaactaaactaaaaataaaaatggagtaactcttctctcttacttctatgttaacagGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCT
    |  |   ||   |  | || |      || | ||||      |      |||| |    | |||   |   | ||| | |||||| || | || |||||||||| |||||||||   || ||||||||||| ||||||||||||||| |||| ||||||||||| |||||||| || ||||| |||||| ||| | | 
tctcaatttttaagagcaatatgataggagtatttgattcttttgcatgcttcctaatagcttatatgtt-tgttttttcccccttact-ctcttttgacagGCAATCGATCGACATTCTCAGCAGCGTGCAGTCACCCAACCTGAGCTTTCTGGGGACTCCAACTCTGAGCAGGCTGTCGAACTCTTTCCTCGCCATCACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaaactaaaaataaaaatggagtaactcttctctcttacttctatgttaacagGCAATCAATCGACATTTATAGTAGCGTGCAGTCTCCCAACCTGAGCTTTTTGGGAACTCCAACTCTAAGCAGGCTCTCCAACTCATTCCTCACCAACTCT
                           ctcttctctcttactt  CT-rich tract
     actaaaaataaaaat  TA-rich tract