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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgatctgtttgctttactcaggacaaataacttaacttttttttttccaaatacctacgtattattacttagtctaggggattttttcctattatgcagGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACTTTGCTTATTTGCTGTGCT

Basic information

species Oryza sativa
transcript LOC_Os02g01100.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g01100.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G105192_T03 (Zea mays), 3'ss of exon 2
--------ttgatctgtttgctttactcaggacaaataacttaacttttttttttccaaatacctacgtattattacttagtctaggggattttttcctattatgcagGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACTTTGCTTATTTGCTGTGCT
         | ||   |||  | |||    || || |  | |||   || |  |   || |  ||   | | |  | | ||  |  |  ||  |||     |||||||||||||||||||| ||||||||||| |||||||| || || |||||||| ||||| || || |||||||||||||||||||| || ||||||||  | ||
tgaaacatgtaatagattttttgtaccatagataagt--cctaaaacttctaatgagaattctcttaat-tgaccattgagcttgtgctatgcttt-----tatgcagGAATAAATGTTCTATGTGGTGTGGGAATCCTATCAACACCTTATGCCATCAAACAAGGCGGGTGGCTTGGACTGGTGATACTCTGTTTATTTGCAATTCT

upper sequence: LOC_Os02g01100.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G134888_T01 (Zea mays), 3'ss of exon 2
-----ttgatctgtttgctttactcaggacaaataacttaacttttttttttccaaatacctacgtattattacttagtctaggggattttttcctattatgcagGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACTTTGCTTATTTGCTGTGCT
        | | |      ||| || |     |  | || | || ||       || | |    || ||     |  || |         ||  || ||||||||||||||||||||| |||||||||||||||||||| || || |||||||| |||||||| |||||| |||| |||| |||||| ||   ||||||| | ||
taaccaaaaacagcagaaattattcggatggtagtatttgaattcttgacgagaaagttctctagttttcacgttgggtgtgcaa-----ttcgcttttatgcagGAATAAATGTTCTATGTGGTGTGGGGATCCTATCAACACCTTATGCCATCAAACAGGGGGGCTGGATTGGGCTGGCGATACTCTGTACATTTGCTCTTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccaaatacctacgtattattacttagtctaggggattttttcctattatgcagGAATAAATGTTCTGTGTGGTGTGGGGATCCTATCGACTCCATATGCCATTAAACAGGGAGGCTGGCTTGGACTGGTGATACTTTGCTTATTTGCTGTGCT
                                     ttttttcctattat  CT-rich tract
                                    attttttcctattat  TA-rich tract