Sequence
atgc intronic sequence ATGC exonic sequence...gaggtttatgtttgtggtgtttttcattcagttgcatcactacattttatgcagagtcattaacaaagagatgtttatgcatataccttttcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTATTTGACTATGTATTGCATCAAATAAATGAAACATTCTTGGCTGGCGGCC
Basic information
species | Oryza sativa |
transcript | LOC_Os01g74310.5 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g74310.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G459642_T02 (Zea mays), 3'ss of exon 3
----gaggtttatgtttgtggtgtttttcattcagttgcatc------actacattttatgcagagtcattaacaaagagatgtttatgcatataccttttcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTATTTGACTATGTATTGCATCAAATAAATGAAACATTCTTGGCTGGCGGCC
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aattccgacttacactggaggt-ttcttggttaagatgctttccatttgccatcttttatatgtagttagtga-----aaatgttttt-tatctatcacc---tttacagTATTCACGAGCCAACTCAAGGGAAGAGAAGCGGGATTTGTTCTTTGTCATTTTTGACTACGTAGTGCATCAAATAAATGAGGCATGCTTGGCTGGTGGTA
upper sequence: LOC_Os01g74310.5 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 11
gaggtttatgtt-tgtggtgtttttcattcagttgcatcactacattttatgcagagtcatt--aacaaagagatgtttatgcatataccttttcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTATTTGACTATGTATTGCATCAAATAAATGAAACATTCTTGGCTGGCGGCC
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-gttgttatgtcataagcagaagcggatttatttctat-actaaaacttatttaaatctattttgacctttacatgataacttcttagttctttcaat-gcagTACTCGCTTGCCAACTCAAGGGAAGAGAGAAGAAATCTATATCTGGTGCTTTTTGACTATGTTTTGCATCAAATTAATGAAACATGCATAGCTACCAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88395645|gb|CI590660.1|CI590660EST: TTCCTGACCAGATAGATCGCGTTGGTGGAGTTGACTATATCTGTCTCGAG TATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTA
genomic: TTCCTGACCAGATAGATCGCGTTGGTGGAGTTGACTATATCTGTCTCGAGgttagtttta ... tcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatgcagagtcattaacaaagagatgtttatgcatataccttttcatttgcagTATTCACGAGCCAACTCAAGGGAGGAGAAGCGGGATTTGTTCTTTGTTCTATTTGACTATGTATTGCATCAAATAAATGAAACATTCTTGGCTGGCGGCC
cattaac putative branch site (score: 2)
ccttttcattt putative PPT
attaacaaa TA-rich tract