1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tattggtaactgcttcattccataattgttggaagagctatgtacacagatctctcatctttattggtctaatctttttttttttttggtttacattcagTGCGGATCAATATGGAAGTAGATTCATACAGCAAAAGCTTGAAACAGCCAGCACTGAAGAAAAAGACATGGTTTTTGCTGAAATCATGCCTCAGGCTCTC
species | Oryza sativa |
transcript | LOC_Os01g74030.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAAATCATATGAGCTCTCTGAAATCGCTGGTCATGTTGTTGAGTTCAG TGCGGATCAATATGGAAGTAGATTCATACAGCAAAAGCTTGAAACAGCCAGEST: gi|218485209|gb|FG954066.1|FG954066
genomic: AGCAAATCATATGAGCTCTCTGAAATCGCTGGTCATGTTGTTGAGTTCAGgtactccttc ... ttacattcagTGCGGATCAATATGGAAGTAGATTCATACAGCAAAAGCTTGAAACAGCCAG
EST: AGCCCATCATATGAGCTCTCTGAAATCGCTGGTCATGTCGTTGAGTTCAG TGCGGATCAATATGGAAGTAGATCCATACAGCCAAAGCTTG
genomic: AGCAAATCATATGAGCTCTCTGAAATCGCTGGTCATGTTGTTGAGTTCAGgtactccttc ... ttacattcagTGCGGATCAATATGGAAGTAGATTCATACAGCAAAAGCTTG
acagatctctcatctttattggtctaatctttttttttttttggtttacattcagTGCGGATCAATATGGAAGTAGATTCATACAGCAAAAGCTTGAAACAGCCAGCACTGAAGAAAAAGACATGGTTTTTGCTGAAATCATGCCTCAGGCTCTC
gtctaat putative branch site (score: 6)
tctttttttttttttg CT-rich tract
tttattggtctaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattggtaactgcttcattccataattgttggaagagctatgtacacagatctctcatctttattggtctaatctttttttttttttggtttacattcagTGCGGATCAATATGGAAGTAGATTCATACAGCAAAAGCTTGAAACAGCCAGCACTGAAGAAAAAGACATGGTTTTTGCTGAAATCATGCCTCAGGCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - -ctgcttc
- - - - - - - - - - - - attgttg
- - - - - - - - - - - - - - - - - - - - - -acacaga