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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatattttttagcttgaagctcttagttattgaagtcatcgaattgtttcttcaaaactctaaatcgcgagtttcctcttaccctccttttcaacatagGTTGGTGAGGAGTACGCTTATTGGGACGACTACCGCGGCTATTTTAATAGCTATCATACTGAATTGCAATATCTCGACTTCTGCAAGGCATTGTCGAAGG

Basic information

species Oryza sativa
transcript LOC_Os01g73670.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58678956|gb|CK067643.1|CK067643
EST:     GCTGGCTTGCTGCTCTGAACGACTACCAACGTCTAGTACCGATAAACTGT                         GTAGGTGAGGAGTACGCTTATTGGGACGACTACCGCGGCTATTTTAATAGC
genomic: GCTGGCTTGCTGCTCTGAACGACTACCAACGTCTAGTACCGATAAACTGTgtacgtatta ... ttcaacatagGTTGGTGAGGAGTACGCTTATTGGGACGACTACCGCGGCTATTTTAATAGC
EST: gi|58658641|gb|CK047321.1|CK047321
EST:     GCTGGCTTGCTGCTCTGAACGACTACCAACGTCTAGTACCGATAAACTGT                         GTTGGTGAGGAGTACGCTTATTGGGACGACTACCGCGGCTATTTTAATAGC
genomic: GCTGGCTTGCTGCTCTGAACGACTACCAACGTCTAGTACCGATAAACTGTgtacgtatta ... ttcaacatagGTTGGTGAGGAGTACGCTTATTGGGACGACTACCGCGGCTATTTTAATAGC
EST: gi|27577720|gb|CB000415.1|CB000415
EST:     GCTGGCTTGCTGCTCTGAACGACTACCAACGTCTAGTACCGATAAACTGT                         GTTGGTGAGGAGTACGCTTATTGGGACGACTACCGCGGCTATTTTAATAGC
genomic: GCTGGCTTGCTGCTCTGAACGACTACCAACGTCTAGTACCGATAAACTGTgtacgtatta ... ttcaacatagGTTGGTGAGGAGTACGCTTATTGGGACGACTACCGCGGCTATTTTAATAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcttcaaaactctaaatcgcgagtttcctcttaccctccttttcaacatagGTTGGTGAGGAGTACGCTTATTGGGACGACTACCGCGGCTATTTTAATAGCTATCATACTGAATTGCAATATCTCGACTTCTGCAAGGCATTGTCGAAGG
                               ctcttac  putative branch site (score: 3)
                           tttcctcttaccctcc  CT-rich tract
      ttcaaaa  TA-rich tract