1 5' 3' | 2 5' 3' | 3 5' 3' |
...atatggaagcatttgcttcctttgcatctcttttgactataccatccatgccacgcattccctaatgaaattaataataaattctacctttgtcctgtagATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAG
species | Oryza sativa |
transcript | LOC_Os01g73020.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCA ATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGEST: gi|84117104|gb|CD150871.1|CD150871
genomic: CACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAgtgagtatcc ... tgtcctgtagATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGG
EST: CACCGTGCTGGGCAGGGCCGCGGTCCAGGCTTATCGCCAAGCCATCGTCA ATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGG
genomic: CACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAgtgagtatcc ... tgtcctgtagATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGG
ccatgccacgcattccctaatgaaattaataataaattctacctttgtcctgtagATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAG
aattaat putative branch site (score: 4)
ttctacctttgtcct putative PPT
taatgaaattaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatggaagcatttgcttcctttgcatctcttttgactataccatccatgccacgcattccctaatgaaattaataataaattctacctttgtcctgtagATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - -tgcttcc
- - - - - - - - - - - tgcatct
- - - - - - - - - - - - - - - - - - - - - - tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cattccc