1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attactccgtgtagcttaccaagcatgatgtgagtaatatgtaaccaatgacaattcgggtttaatttccctggtatttttttcctgctacttgttgcagGCCTGCTATTGCTTCATTTGGGAAATGCTTAAATCCCTTTTATCAGTTTAGTCCTCCATGGATGGTTAGATGGGCTAGCCATAGCTCAGTCAATCTAGTT
species | Oryza sativa |
transcript | LOC_Os01g72820.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCAATCTGTCCCAGAGGGCACCAATCTCGCCTTCCCCTGAACCTCTCAG GCCTGCTATTGCTTCATTTGGGAAATGCTTAAATCCCTTTTATCAGTTTAGEST: gi|58672490|gb|CK061176.1|CK061176
genomic: CTCAATCTGTCCCAGAGGGCACCAATCTCGCCTTCCCCTGAACCTCTCAGgtaactctat ... cttgttgcagGCCTGCTATTGCTTCATTTGGGAAATGCTTAAATCCCTTTTATCAGTTTAG
EST: CTCAATCTGTCCCAGAGGGCACCAATCTCGCCTTCCCCTGAACCTCTCAG GCCTGCTATTGCTTCATTTGGGAAATGCTTAAATCCCTTTTATCAGTTTAG
genomic: CTCAATCTGTCCCAGAGGGCACCAATCTCGCCTTCCCCTGAACCTCTCAGgtaactctat ... cttgttgcagGCCTGCTATTGCTTCATTTGGGAAATGCTTAAATCCCTTTTATCAGTTTAG
caatgacaattcgggtttaatttccctggtatttttttcctgctacttgttgcagGCCTGCTATTGCTTCATTTGGGAAATGCTTAAATCCCTTTTATCAGTTTAGTCCTCCATGGATGGTTAGATGGGCTAGCCATAGCTCAGTCAATCTAGTT
gtttaat putative branch site (score: 4)
tttttttcctgctact putative PPT
tattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attactccgtgtagcttaccaagcatgatgtgagtaatatgtaaccaatgacaattcgggtttaatttccctggtatttttttcctgctacttgttgcagGCCTGCTATTGCTTCATTTGGGAAATGCTTAAATCCCTTTTATCAGTTTAGTCCTCCATGGATGGTTAGATGGGCTAGCCATAGCTCAGTCAATCTAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA