1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcacattccaaaagagacctttattttctcaaaaagaaaaaaagagagaaagacctttatctcttgttctgtttttcattccttgtgttctgctttgcagGTTTAACATCACGGGACAG
species | Oryza sativa |
transcript | LOC_Os01g71720.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCTCGCCGGCAACGACTGGGCTCCCTTTGCTTCTTGGATCACTGGCTG GTTTAACATCACGGGACAGEST: gi|66923657|gb|CX110505.1|CX110505
genomic: AAGCTCGCCGGCAACGACTGGGCTCCCTTTGCTTCTTGGATCACTGGCTGgtgagtacgt ... tgctttgcagGTTTAACATCACGGGACAG
EST: AAGCTCGCCGGCAACGACTGGGCTCCCTTTGCTTCTTGGATCACTGGCTG GTTTAACATCACGGGACAGEST: gi|88421312|gb|CI569157.1|CI569157
genomic: AAGCTCGCCGGCAACGACTGGGCTCCCTTTGCTTCTTGGATCACTGGCTGgtgagtacgt ... tgctttgcagGTTTAACATCACGGGACAG
EST: AAGCTCGCCGGCAACGACTGGGCTCCCTTTGCTTCTTGGATCACTGGCTG GTTTAACATCACGGGACAG
genomic: AAGCTCGCCGGCAACGACTGGGCTCCCTTTGCTTCTTGGATCACTGGCTGgtgagtacgt ... tgctttgcagGTTTAACATCACGGGACAG
gagaaagacctttatctcttgttctgtttttcattccttgtgttctgctttgcagGTTTAACATCACGGGACAG
ttctgcttt CT-rich tract
tttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacattccaaaagagacctttattttctcaaaaagaaaaaaagagagaaagacctttatctcttgttctgtttttcattccttgtgttctgctttgcagGTTTAACATCACGGGACAG
-cacattc
- - - - -aaaagaga
- - - - - - - - - - - - - -ctcaaaa
- - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - -gagagaaa