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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttgcttaaatgtctggcacatccatttttttattgtcacataatgtactaactacagtctattttagGTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCCCAAATTCTGAAATCAGAACCAACTGGAACCAGATTTTGTTTCCCAATTA

Basic information

species Oryza sativa
transcript LOC_Os01g70950.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g70950.2 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 10
------------------gttcttgcttaaa----tgtctggcac--atccatttttttat-tgtcacata-atgtactaactacagtctattttagGTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCCCAAATTCTGAAATCAGAACCAACTGGAACCAGATTTTGTTTCCCAATTA
                   |  || || ||     |  |||  ||  | || |  | |||  |||||   | || |   |  |   ||   |  ||||| ||||| |||||||||||||| ||||| ||  ||||||||||||||||  ||||||| |||   ||| |    || || | |||  | || ||  || 
gtaacatcttaaacaaccatcttttctgaagaacttacctgatactcaaccttcctcttacctgtcatgcacattttaaagatcaggtgcttgctagGTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCTTCTAAAATTCTCAAAAGTGAAGCTGAGGGGACTAAATTCCGCTTTCCTGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672383|gb|CK061069.1|CK061069
EST:     AGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTCGGATGATAAG                         GTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC
genomic: AGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTTGGATGATAAGgttcttgctt ... tctattttagGTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC
EST: gi|218481434|gb|FG954232.1|FG954232
EST:     GCCAAGGCCACATTTGGATGATAAG                         GTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC
genomic: GCCAAGGCCACATTTGGATGATAAGgttcttgctt ... tctattttagGTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC
EST: gi|218485810|gb|FG946182.1|FG946182
EST:     AGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTTGGATGATAAG                         GTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC
genomic: AGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTTGGATGATAAGgttcttgctt ... tctattttagGTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggcacatccatttttttattgtcacataatgtactaactacagtctattttagGTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCCCAAATTCTGAAATCAGAACCAACTGGAACCAGATTTTGTTTCCCAATTA
                                 tactaac  putative branch site (score: 0)
                                             tctatttt  putative PPT
           atttttttattgtcac  TA-rich tract