Sequence
atgc intronic sequence ATGC exonic sequencegtatgcttctatcttaccactgcacattatgcatgttctcggttatccacatggtattaaaaacttgctgctcatcatacattcctctatgttttccagTTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTACTA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g70920.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88569821|gb|CI660996.1|CI660996EST: GATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGA TTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTA
genomic: GATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGAgtatgcttct ... tgttttccagTTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTA
EST:
gi|86530226|gb|CI170432.1|CI170432EST: GATTGCCCTGGTGGAAGCCCAACTGTGAATGAGTACATGAATTACTATGA TTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTA
genomic: GATTGCCCTGGTGGAAGGCCAACTGTGAATGAGTACATGAATTACTATGAgtatgcttct ... tgttttccagTTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atccacatggtattaaaaacttgctgctcatcatacattcctctatgttttccagTTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTACTA
ttcctctatgttttcc CT-rich tract
tattaaaaactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcttctatcttaccactgcacattatgcatgttctcggttatccacatggtattaaaaacttgctgctcatcatacattcctctatgttttccagTTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGGTACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA