1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...accatttaactcagtcctgtaaacatatttattttgcattcatgtctcattttccaggcacatataactgtttgatctcattctctctaaaatatttcagGTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTCAAGGAAGACTATTCTAGAAGGTTCAAGGAGTTCAAATCCAAGTCG
species | Oryza sativa |
transcript | LOC_Os01g70060.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGTGTTTGTCAACGGCGATGATTTTGGAAGGAATGTCGTACAGAGACTG GTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTCEST: gi|29638160|gb|CB643169.1|CB643169
genomic: ATGTGTTTGTCAACGGCGATGATTTTGGAAGGAATGTCGTACAGAGACTGgtatgtcaag ... aatatttcagGTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTC
EST: ATGTGTTTGTCAACGGCGATGATTTTGGAAGGAATGTCGTACAGAGACTG GTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTCEST: gi|58659612|gb|CK048292.1|CK048292
genomic: ATGTGTTTGTCAACGGCGATGATTTTGGAAGGAATGTCGTACAGAGACTGgtatgtcaag ... aatatttcagGTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTC
EST: ATGTGTTTGTCAACGGCGATGATTTTGGAAGGAATGTCGTACAGAGACTG GTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTC
genomic: ATGTGTTTGTCAACGGCGATGATTTTGGAAGGAATGTCGTACAGAGACTGgtatgtcaag ... aatatttcagGTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTC
ctcattttccaggcacatataactgtttgatctcattctctctaaaatatttcagGTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTCAAGGAAGACTATTCTAGAAGGTTCAAGGAGTTCAAATCCAAGTCG
ctctaaa putative branch site (score: 15)
tctctaaaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accatttaactcagtcctgtaaacatatttattttgcattcatgtctcattttccaggcacatataactgtttgatctcattctctctaaaatatttcagGTTGACATATGGGAAGAACGTAACATATTTGGATCCCATGGGCAAAGTCTCAAGGAAGACTATTCTAGAAGGTTCAAGGAGTTCAAATCCAAGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - tcctgta
- - - - - - - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - caggcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtttg