Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87005533|gb|CI287357.1|CI287357EST: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
genomic: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
EST:
gi|58679461|gb|CK068148.1|CK068148EST: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
genomic: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
EST:
gi|218493953|gb|FG957209.1|FG957209EST: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
genomic: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
EST:
gi|218497416|gb|FG947812.1|FG947812EST: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
genomic: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
EST:
gi|66915423|gb|CX102271.1|CX102271EST: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTAC
genomic: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTAC
EST:
gi|218478405|gb|FG958093.1|FG958093EST: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACAATCCTTATCT
genomic: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCT
EST:
gi|58656047|gb|CK044727.1|CK044727EST: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
genomic: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
EST:
gi|218478655|gb|FG958101.1|FG958101EST: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
genomic: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
EST:
gi|218479656|gb|FG949097.1|FG949097EST: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
genomic: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
EST:
gi|58598236|gb|CK008764.1|CK008764EST: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
genomic: ACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
EST:
gi|58595027|gb|CF993335.1|CF993335EST: AATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATG GACCCTAGGACAGAGAACGATCCTTATCTTGGATTCATCTACACCTCCTTC
genomic: AATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
73 (upstream exon),
57 (downstream exon)
Score:
51CAGGCATGGTGACCTCCTGAACAAATATCTCTACCTCACTGGTAGGGTGGACATGAGACAAATTGAGAAGACAATTCAGTATCTTATTGGCTCTGGAATGgtaacagttt ... tcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTCCAAGAGCGTGCGACCTTCATCTCACATGGGAACACTGCTCGCCATGCCA
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atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggcaattgagcagagaaatctgtagcacttactcttttgctgcatcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTCCAAGAGCGTGCGACCTTCATCTCACATGGGAACACTGCTCGCCATGCCA
cacttac putative branch site (score: 51)
tcatttcc putative PPT
atcattt TA-rich tract