1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgctatttcaaatcggggttctgttaactgttatagcaatctgtatctctggataatacggcaacatgtcttggatgaaataatcgttctatttttttttcattttttaacagATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTATTCAGTCACAAGGTTGGCCAATGGCTTTGAAGGGCAGGGACATGATCGG
species | Oryza sativa |
transcript | LOC_Os01g68320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAG ATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTAEST: gi|33678998|gb|CF307237.1|CF307237
genomic: CCACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAGgtttgctatt ... tttttaacagATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTA
EST: CCACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAG ATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTAEST: gi|33801394|gb|CF326568.1|CF326568
genomic: CCACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAGgtttgctatt ... tttttaacagATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTA
EST: CCACGACGTGCCCATTCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAG ATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTAEST: gi|29661777|gb|CB658052.1|CB658052
genomic: CCACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAGgtttgctatt ... tttttaacagATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTA
EST: CCACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAG ATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTAEST: gi|29678103|gb|CB674378.1|CB674378
genomic: CCACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAGgtttgctatt ... tttttaacagATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTA
EST: CCACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAG ATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTAEST: gi|29669296|gb|CB665571.1|CB665571
genomic: CCACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAGgtttgctatt ... tttttaacagATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTA
EST: CCACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAG ATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTA
genomic: CCACGACGTGCCCAAGCCGGTTCGCTACTTCCAGGAGGCCAACTTCCCAGgtttgctatt ... tttttaacagATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTA
cggcaacatgtcttggatgaaataatcgttctatttttttttcattttttaacagATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTATTCAGTCACAAGGTTGGCCAATGGCTTTGAAGGGCAGGGACATGATCGG
tcgttctatttttttt CT-rich tract
atgaaataatcgttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctatttcaaatcggggttctgttaactgttatagcaatctgtatctctggataatacggcaacatgtcttggatgaaataatcgttctatttttttttcattttttaacagATTACTGTATGCAAGCAATAGCCAAGAGTGGATTCGTAGAGCCCACGCCTATTCAGTCACAAGGTTGGCCAATGGCTTTGAAGGGCAGGGACATGATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG