1 5' 3' | 2 5' 3' | 3 5' 3' |
...actgaatggtttgtggctatacaaaatagtaatagggcttggagaattttccctaagtttgattgaccttgtgatgatgcctttttctccttctttctagGATCAATTATGCAACTAGAAATATTGTGATCGGAAGGAGTTCCAGGCCAGGGCACTGTGATTTGCTTCTAAACAGACATTATGGCTTTCAAGCATCAAAA
species | Oryza sativa |
transcript | LOC_Os01g68230.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
attttccctaagtttgattgaccttgtgatgatgcctttttctccttctttctagGATCAATTATGCAACTAGAAATATTGTGATCGGAAGGAGTTCCAGGCCAGGGCACTGTGATTTGCTTCTAAACAGACATTATGGCTTTCAAGCATCAAAA
gattgac putative branch site (score: 3)
tgatgcctttttctcc putative PPT
taagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgaatggtttgtggctatacaaaatagtaatagggcttggagaattttccctaagtttgattgaccttgtgatgatgcctttttctccttctttctagGATCAATTATGCAACTAGAAATATTGTGATCGGAAGGAGTTCCAGGCCAGGGCACTGTGATTTGCTTCTAAACAGACATTATGGCTTTCAAGCATCAAAA
- tgaatgg
- - - - - - - - - -tacaaaa
- - - - - - - - - - - - - - - - - - gcttgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatg