1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taacttggaccacaaaacgtgtagtagaaatatttgagaaaaaaacatttgcatattagacgtgctaatactgtgtaaattttgttaactaattgtgcagTGGTGATGAGGAGGAGATTGACGAGAAGAGCGCGGCGCAGATGCTGGTGCTGGCGCACGCGTACCGGGTGCCGTGGCTGAAGCGGCGGTGCGAGGGGGCG
species | Oryza sativa |
transcript | LOC_Os01g68020.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCGACGACGCCGCGGCCGCCTTCGTCCGCCTCCTCTACGCCGGCAGCAG TGGTGATGAGGAGGAGATTGACGAGAAGAGCGCGGCGCATATGCTGGTGCTEST: gi|29676444|gb|CB672719.1|CB672719
genomic: ACCGACGACGCCGCGGCCGCCTTCGTCCGCCTCCTCTACGCCGGCAGCAGgtaccgtgcc ... aattgtgcagTGGTGATGAGGAGGAGATTGACGAGAAGAGCGCGGCGCAGATGCTGGTGCT
EST: ACCGACGACGCCGCGGCCGCCTTCGTCCGCCTCCTCTACGCCGGCAGCAG TGGTGATGATGAGGAGATTGACCAGAAGAGCGCGGCGCACATGCTGGTGCTEST: gi|218504052|gb|FG943732.1|FG943732
genomic: ACCGACGACGCCGCGGCCGCCTTCGTCCGCCTCCTCTACGCCGGCAGCAGgtaccgtgcc ... aattgtgcagTGGTGATGAGGAGGAGATTGACGAGAAGAGCGCGGCGCAGATGCTGGTGCT
EST: ACCGACGACGCCGCGGCCGCCTTCGTCCGCCTCCTCTACGCCGGCAGCAG TGGTGATGAGGAGGAGATTGACGAGAAGAGCGCGGCGCAGATGCTGGTGCT
genomic: ACCGACGACGCCGCGGCCGCCTTCGTCCGCCTCCTCTACGCCGGCAGCAGgtaccgtgcc ... aattgtgcagTGGTGATGAGGAGGAGATTGACGAGAAGAGCGCGGCGCAGATGCTGGTGCT
catttgcatattagacgtgctaatactgtgtaaattttgttaactaattgtgcagTGGTGATGAGGAGGAGATTGACGAGAAGAGCGCGGCGCAGATGCTGGTGCTGGCGCACGCGTACCGGGTGCCGTGGCTGAAGCGGCGGTGCGAGGGGGCG
aactaat putative branch site (score: 2)
tgtaaattttgttaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacttggaccacaaaacgtgtagtagaaatatttgagaaaaaaacatttgcatattagacgtgctaatactgtgtaaattttgttaactaattgtgcagTGGTGATGAGGAGGAGATTGACGAGAAGAGCGCGGCGCAGATGCTGGTGCTGGCGCACGCGTACCGGGTGCCGTGGCTGAAGCGGCGGTGCGAGGGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - -ccacaaa
- - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - -catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgcta