1 5' 3' | 2 5' 3' | 3 5' 3' |
...atagaaaagtactttctcaaagtcatgctttttattccgactttgctctctgctgtaacagaaaatgttataatgtatttactttgtaactcctgatcagGTTATATTTGGGCGACGGTATGTTGGAATAATGTCAGCTGAATCAGTAGGAAACTATGGAATTCG
species | Oryza sativa |
transcript | LOC_Os01g67730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAATATCAATATCTGGTGAGAAG GTTATATTTGGGCGACGGTATGTTGGAATAATGTCAGCTGAATCAGTAGGGEST: gi|16576608|gb|BI803904.1|BI803904
genomic: ATAATATCAGTATCTGGTGAGAAGgtaattttct ... tcctgatcagGTTATATTTGGGCGACGGTATGTTGGAATAATGTCAGCTGAATCAGTAGGA
EST: TACATAGTCCAGCAGCTGACAGC-AAATAATATCAGTATCTGGTGAGAAG GTTATATTTGGGCGACGGTATGTTGGAATAATGTCAGCTGAATCAGTAGGA
genomic: TACATAGTCCAGCAGCTGACAGCAAAATAATATCAGTATCTGGTGAGAAGgtaattttct ... tcctgatcagGTTATATTTGGGCGACGGTATGTTGGAATAATGTCAGCTGAATCAGTAGGA
ctctctgctgtaacagaaaatgttataatgtatttactttgtaactcctgatcagGTTATATTTGGGCGACGGTATGTTGGAATAATGTCAGCTGAATCAGTAGGAAACTATGGAATTCG
ttgtaac putative branch site (score: 8)
ctcct CT-rich tract
aaaatgttataatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagaaaagtactttctcaaagtcatgctttttattccgactttgctctctgctgtaacagaaaatgttataatgtatttactttgtaactcctgatcagGTTATATTTGGGCGACGGTATGTTGGAATAATGTCAGCTGAATCAGTAGGAAACTATGGAATTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
atagaaaa
- - - - - - - - - - -gtcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaaa