Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattgttggctcctcagtaacatgaatttaatctagcccatctttgatgatagtgctaaccggagtgaaacatggatgattgttatatagTGGGATGACCGCAAGGCAAGGGGTTTGTTTCACCATGACATCAGTTCCTGCGAGACAAAG

Basic information

species Oryza sativa
transcript LOC_Os01g67520.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67520.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G359397_T03 (Zea mays), 3'ss of exon 2
gtttgtattgttggctc--ctcagtaacatgaattt--------aatctagcccatctttgatgatagtgctaaccggagtg-aaacatggatgattgttatatagTGGGATGACCGCAAGGCAAGGGGTTTGTTTCACCATGACATCAGTTCCTGCGAGACAAAG
|||||||   ||  |    || ||  |||| | ||         |||   |       | ||    | |||||   | |||  ||||||| | | |  ||    |||||||||| |||||| ||||||| |||||||||||||||||||||||||| || ||||||
gtttgtaacttttacatgtcttagacacatcatttctgcattacaattatgatttgtatcgaaagaaatgctagttgaagtataaacatgaacggtcattgc--agTGGGATGATCGCAAGACAAGGGGCTTGTTTCACCATGACATCAGTTCCTGTGAAACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88351080|gb|CI620740.1|CI620740
EST:     AGGAAAATGGCACAAATTTGTCGCCATTTGTCCGCAAACTTTTTAAAGAG                         TGGGATGACCGCAAGGCAAGG
genomic: AGGAAAATGGCACAAATTTGTCGCCATTTGTCCGCAAACTTTTTAAAGAGgtttgtattg ... tgttatatagTGGGATGACCGCAAGGCAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcccatctttgatgatagtgctaaccggagtgaaacatggatgattgttatatagTGGGATGACCGCAAGGCAAGGGGTTTGTTTCACCATGACATCAGTTCCTGCGAGACAAAG
                  tgctaac  putative branch site (score: 1)
                                        atgattgttatata  TA-rich tract