1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgtttacctgggttctatgtttttggcgcctatcaatttaattaggtaatgttcaaatgcttgtgcttttcagAACGTATCTTAGATGGGAGCAGTGGAGAAGTTGCAGTTGATCATTACCATCGATACAAG
species | Oryza sativa |
transcript | LOC_Os01g67220.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAG AACGTATCTTAGATGGGAGCAGTGGAGAAGTTGCACGTTGATCATTACCATEST: gi|88339606|gb|CI660472.1|CI660472
genomic: GGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGgtttgtttac ... tgcttttcagAACGTATCTTAGATGGGAGCAGTGGAGAAGTTGCA-GTTGATCATTACCAT
EST: GGAGGGAGGCAAAGGACATAACATATGGGATGTTTTCACAGAAAACAAAG AACGTATCTTAGATGGEST: gi|572052|gb|D41563.1|D41563
genomic: GGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGgtttgtttac ... tgcttttcagAACGTATCTTAGATGG
EST: GGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAG A-CGTATCTTAGATGGGAGCAGTTGAGAAGTTGCANTTGATCATTACCATCEST: gi|88356318|gb|CI652755.1|CI652755
genomic: GGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGgtttgtttac ... tgcttttcagAACGTATCTTAGATGGGAGCAGTGGAGAAGTTGCAGTTGATCATTACCATC
EST: GGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAG AACGTATCTTAGATGGGAGCAGTGGAGAAGTTGCAGTTGATCATTACCATCEST: gi|88761211|gb|CI770767.1|CI770767
genomic: GGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGgtttgtttac ... tgcttttcagAACGTATCTTAGATGGGAGCAGTGGAGAAGTTGCAGTTGATCATTACCATC
EST: GGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAG AACGTATCTTACATGGGAGCAGTGGAGAAGTTGCAGTTGATCATTACCATC
genomic: GGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGgtttgtttac ... tgcttttcagAACGTATCTTAGATGGGAGCAGTGGAGAAGTTGCAGTTGATCATTACCATC
gtttttggcgcctatcaatttaattaggtaatgttcaaatgcttgtgcttttcagAACGTATCTTAGATGGGAGCAGTGGAGAAGTTGCAGTTGATCATTACCATCGATACAAG
atttaat putative branch site (score: 4)
tgcttttc putative PPT
aatttaattaggtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttacctgggttctatgtttttggcgcctatcaatttaattaggtaatgttcaaatgcttgtgcttttcagAACGTATCTTAGATGGGAGCAGTGGAGAAGTTGCAGTTGATCATTACCATCGATACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT