1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaactactttgtcctttccatgataaatctccctcattagtcactacatatacaatgctttaatttccatccaagtaggatttcccctattattcttcttaatatgctacttagtaaataactcactatgagtaatatattgggtgcagGTTATTCAGGCTGATTCAATTATTGCCAAGATGCAGATATATGTATTCGAATTATGCCAAATTGTCAATTCTCTCATGCAGATTGAGTCAATGCATTTGG
species | Oryza sativa |
transcript | LOC_Os01g66130.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGACTGAGCTAGTTGGAGGCTGGAATCAAATGATGAGCAAGATTTATTTT GTTATTCAGGCTGATTCAEST: gi|88445428|gb|CI584541.1|CI584541
genomic: CGACTGAGCTAGTTGGAGGCTGGAATCAAATGATGAGCAAGATTTATTTTgtaactactt ... ttgggtgcagGTTATTCAGGCTGATTCA
EST: CGACTGAGCTAGTTGGAGGCTGGAATCAAATGATGAGCAAGATTTATTTT GTTATTCAGGCTGATTCAEST: gi|88407009|gb|CI578537.1|CI578537
genomic: CGACTGAGCTAGTTGGAGGCTGGAATCAAATGATGAGCAAGATTTATTTTgtaactactt ... ttgggtgcagGTTATTCAGGCTGATTCA
EST: CGACTGAGCTAGTTGGAGGCTGGAATCAAATGATGAGCAAGATTTATTTT GTTATTCAGGCTGATTCAATEST: gi|58665740|gb|CK054426.1|CK054426
genomic: CGACTGAGCTAGTTGGAGGCTGGAATCAAATGATGAGCAAGATTTATTTTgtaactactt ... ttgggtgcagGTTATTCAGGCTGATTCAAT
EST: CGACTGAGCTAGTTGGAGGCTGGAATCAAATGATGAGCAAGATTTATTTT GTTATTCAGGCTGATTCAATTATTGCCAAGATGCAGATATATGTATTCGAA
genomic: CGACTGAGCTAGTTGGAGGCTGGAATCAAATGATGAGCAAGATTTATTTTgtaactactt ... ttgggtgcagGTTATTCAGGCTGATTCAATTATTGCCAAGATGCAGATATATGTATTCGAA
cttcttaatatgctacttagtaaataactcactatgagtaatatattgggtgcagGTTATTCAGGCTGATTCAATTATTGCCAAGATGCAGATATATGTATTCGAATTATGCCAAATTGTCAATTCTCTCATGCAGATTGAGTCAATGCATTTGG
aactcac putative branch site (score: 5)
tatgagtaatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactactttgtcctttccatgataaatctccctcattagtcactacatatacaatgctttaatttccatccaagtaggatttcccctattattcttcttaatatgctacttagtaaataactcactatgagtaatatattgggtgcagGTTATTCAGGCTGATTCAATTATTGCCAAGATGCAGATATATGTATTCGAATTATGCCAAATTGTCAATTCTCTCATGCAGATTGAGTCAATGCATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT