Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|38480683|gb|CF964772.1|CF964772EST: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG TTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
EST:
gi|42793913|gb|AB117812.1|AB117812EST: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG TTGGATGATTGGGTGCTGTGCCNGATTTACAACAAGAAGGGCGGGCTGGGA
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGG-A
EST:
gi|58595213|gb|CF993521.1|CF993521EST: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG TTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
EST:
gi|58589527|gb|CF987835.1|CF987835EST: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG TTGGATGATTGGGTGCTGTGCCGGATTTACAACA
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACA
EST:
gi|15008325|gb|AU222713.1|AU222713EST: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG TTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
EST:
gi|58589510|gb|CF987818.1|CF987818EST: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG TCGGATGATCGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
EST:
gi|58593932|gb|CF992240.1|CF992240EST: ACCGNCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG TTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGA
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGA
EST:
gi|58591240|gb|CF989548.1|CF989548EST: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG TTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
73 (upstream exon),
74 (downstream exon)
Score:
30CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAGAAGCCGCCGGCCGCGGCGGTGGCGGCGGCGGGGATGGTGAGCAGCGGCG
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atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgagtgtaaatttgtttctaaactttgtttatgaatttgttttgtattggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAGAAGCCGCCGGCCGCGGCGGTGGCGGCGGCGGGGATGGTGAGCAGCGGCG
ttctaaa putative branch site (score: 30)
tttatgaatttgtttt TA-rich tract