1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attgtttagtgactgcaaaacctcgtcattctgaacaaaattttgattgcatctgtggacaataaggctgttggttaaccatggagagtgttgttttcagGTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTACGAAGCTGCAAGTTCTTTCTTTACGGCAAATCAAACCTCAGCTCGAGGAC
species | Oryza sativa |
transcript | LOC_Os01g65920.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGGCGTGATACATTAGAATGGGGAGTCACCGAATCTTTCTCTTTCGTG GTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTACEST: gi|29643871|gb|CB648878.1|CB648878
genomic: GTTGGCGTGATACATTAGAATGGGGAGTCA-CGAATCTTTCTCTTTCGTGgtgagtttgg ... ttgttttcagGTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC
EST: GGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTG GTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC
genomic: GGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTGgtgagtttgg ... ttgttttcagGTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC
attgcatctgtggacaataaggctgttggttaaccatggagagtgttgttttcagGTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTACGAAGCTGCAAGTTCTTTCTTTACGGCAAATCAAACCTCAGCTCGAGGAC
ggttaac putative branch site (score: 3)
ttgttttc putative PPT
acaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtttagtgactgcaaaacctcgtcattctgaacaaaattttgattgcatctgtggacaataaggctgttggttaaccatggagagtgttgttttcagGTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTACGAAGCTGCAAGTTCTTTCTTTACGGCAAATCAAACCTCAGCTCGAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC