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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tataactataactgaaacttatatatatatatctttttaaagaaaaccagaattacagcattgctgttggtttgtgatgaacgatgaatggtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAACGGGACGGGGTCGGTGATCGAGGCCATCTACGTGGTGATCTTCCTCATC

Basic information

species Oryza sativa
transcript LOC_Os01g65880.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88577893|gb|CI674506.1|CI674506
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|88375222|gb|CI680981.1|CI680981
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA
EST: gi|8856858|gb|AU094176.1|AU094176
EST:     TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTG                         GTACGGGCTGCCGTTCGTGTCACCGANCAACATCCTGGTGACGACGATCAA
genomic: TCCGGCGTGCCTTACAACATGACACTTCTCAACTGCCTGCTATCTGCTTGgtaactaact ... gtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accagaattacagcattgctgttggtttgtgatgaacgatgaatggtggttgaagGTACGGGCTGCCGTTCGTGTCACCGAACAACATCCTGGTGACGACGATCAACGGGACGGGGTCGGTGATCGAGGCCATCTACGTGGTGATCTTCCTCATC
     aattaca  TA-rich tract