1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgttggttgtgaaagcaggtcactgatctaattgctatcttgttaaatgtacatagacgtcgaatttattatttatcttttcttcttcctatttctgtagATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGACATTGATTATACTCTATTCGACCATAGGTCCGCTGCTGAGAACCCTATCG
species | Oryza sativa |
transcript | LOC_Os01g65450.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAG ATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGACEST: gi|29676775|gb|CB673050.1|CB673050
genomic: ATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAGgtatattccc ... atttctgtagATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGAC
EST: ATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAG ATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGACEST: gi|396941533|gb|HO188742.1|HO188742
genomic: ATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAGgtatattccc ... atttctgtagATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGAC
EST: ATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAG ATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTANAC
genomic: ATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAGgtatattccc ... atttctgtagATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGAC
aatgtacatagacgtcgaatttattatttatcttttcttcttcctatttctgtagATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGACATTGATTATACTCTATTCGACCATAGGTCCGCTGCTGAGAACCCTATCG
tttattatttatcttt CT-rich tract
aatttattatttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttggttgtgaaagcaggtcactgatctaattgctatcttgttaaatgtacatagacgtcgaatttattatttatcttttcttcttcctatttctgtagATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGACATTGATTATACTCTATTCGACCATAGGTCCGCTGCTGAGAACCCTATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT