1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtttgctaaagatgaatcgtatgtctgatattatttctctttaccaccaaatccattttatgtttgtggcaagtgcttattattgttggcacactgcagGTCTTGGTTTTCTGACTTCTCTGGTATTCATTTTTCTGGTTGGAATATTTGTTTCCTCATGGGTGGGTTCAACCATCTTTTGGGTTGGAGAATGGTTTAT
species | Oryza sativa |
transcript | LOC_Os01g64780.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATGGCTTTTTCAGCCCACTATATGCAAAACTTGGGATCGACATATTTG GTCTTGGTTTTCTGACTTCTCTGGTATTCATTTTTCTGGTTGGAATATTTGEST: gi|27547116|gb|CA765115.2|CA765115
genomic: TGATGGCTTTTTCAGCCCACTATATGCAAAACTTGGGATCGACATATTTGgtaattgtgg ... cacactgcagGTCTTGGTTTTCTGACTTCTCTGGTATTCATTTTTCTGGTTGGAATATTTG
EST: TGATGGCTTTTT-AGCCCACTATATGCAAAACTTGGGATCGACATATTTG GTCTTGGCTTTCTGACTTCTCTGGTATTCATTTTTCTGGTTGGAATATTTGEST: gi|27920852|gb|CB096660.1|CB096660
genomic: TGATGGCTTTTTCAGCCCACTATATGCAAAACTTGGGATCGACATATTTGgtaattgtgg ... cacactgcagGTCTTGGTTTTCTGACTTCTCTGGTATTCATTTTTCTGGTTGGAATATTTG
EST: TGATGGCTTTTT-AGCCCACTATATGCAAAACTTGGGATCGACATATTTG GTCTTGGCTTTCTGACTTCTCTGGTATTCATTTTTCTGGTTGGAATATTTG
genomic: TGATGGCTTTTTCAGCCCACTATATGCAAAACTTGGGATCGACATATTTGgtaattgtgg ... cacactgcagGTCTTGGTTTTCTGACTTCTCTGGTATTCATTTTTCTGGTTGGAATATTTG
caccaaatccattttatgtttgtggcaagtgcttattattgttggcacactgcagGTCTTGGTTTTCTGACTTCTCTGGTATTCATTTTTCTGGTTGGAATATTTGTTTCCTCATGGGTGGGTTCAACCATCTTTTGGGTTGGAGAATGGTTTAT
attttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttgctaaagatgaatcgtatgtctgatattatttctctttaccaccaaatccattttatgtttgtggcaagtgcttattattgttggcacactgcagGTCTTGGTTTTCTGACTTCTCTGGTATTCATTTTTCTGGTTGGAATATTTGTTTCCTCATGGGTGGGTTCAACCATCTTTTGGGTTGGAGAATGGTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA