1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgaagagatgctggcgcttttgcagttcatgagctgcttgtcggagtacgattttttttttgatattttctgtggtctttctgttgcatacagAGCGAACTGCTCCAGGTGGTGCAGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG
species | Oryza sativa |
transcript | LOC_Os01g64770.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCCCTCCAAGGTGATCCACATACGGAACGTCGGGCATGAGATCTCCGAG AGCGAACTGCTCCAGGTGGTGCAGCCGTTCGGCACTGTCGCCAAGCTCGTCEST: gi|88730907|gb|CI754520.1|CI754520
genomic: AGCCCTCCAAGGTGATCCACATACGGAACGTCGGGCATGAGATCTCCGAGgtgaagagat ... ttgcatacagAGCGAACTGCTCCAGGTGGTGCAGCCGTTCGGCACTGTCGCCAAGCTCGTC
EST: AGCCCTCCAAGGTGATCCACATACGGAACGTCGGGCATGAGATCTCCGAG AGCGAACTGCTCCAGGTGGTGCAGCCGTTCG
genomic: AGCCCTCCAAGGTGATCCACATACGGAACGTCGGGCATGAGATCTCCGAGgtgaagagat ... ttgcatacagAGCGAACTGCTCCAGGTGGTGCAGCCGTTCG
tgtcggagtacgattttttttttgatattttctgtggtctttctgttgcatacagAGCGAACTGCTCCAGGTGGTGCAGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG
ttttgat putative branch site (score: 9)
tctttctgtt putative PPT
tacgattttttttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagagatgctggcgcttttgcagttcatgagctgcttgtcggagtacgattttttttttgatattttctgtggtctttctgttgcatacagAGCGAACTGCTCCAGGTGGTGCAGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC