1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagcgccctcgccacatgccacgccacaagggattcttcccttggatttacactcacttgactaacgatgcgtttcttcttggttttgcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAAACGGGGTTCATCATG
species | Oryza sativa |
transcript | LOC_Os01g64670.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGCTGACGCTCCGGCTGTGTTCAACGTT GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAAEST: gi|88414803|gb|CI604161.1|CI604161
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
EST: GCGCTGACGCTCCGGCTGTGTTCAACGTT GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAAEST: gi|218485453|gb|FG947366.1|FG947366
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
EST: GCGCTGACGCTCCGGCTGTGTTCAACGTT GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAAEST: gi|218503045|gb|FG970333.1|FG970333
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
EST: GCGCTGACGCTCCGGCTGTGTTCAACGTT GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAAEST: gi|88395925|gb|CI593127.1|CI593127
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
EST: GCGCTGACGCTCCGGCTGTGTTCAACGTT GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAAEST: gi|218499150|gb|FG960130.1|FG960130
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
EST: GCGCTGACGCTCCGGCTGTG-TCAACGTT GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
tggatttacactcacttgactaacgatgcgtttcttcttggttttgcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAAACGGGGTTCATCATG
gactaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgccctcgccacatgccacgccacaagggattcttcccttggatttacactcacttgactaacgatgcgtttcttcttggttttgcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAAACGGGGTTCATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA