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gtacgaactcactctcttctccccttaaaccatttctttgctcagagtgttctcaatatttatggtttttcactgcgatcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA
species | Oryza sativa |
transcript | LOC_Os01g64660.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTCTCGTCAGCAGCGGCCGCACC TGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGEST: gi|58687204|gb|CK075891.1|CK075891
genomic: GGCTCTCGTCAGCAGCGGCCGCACCgtacgaactc ... tcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCG
EST: TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACC TGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGEST: gi|38481229|gb|CF965318.1|CF965318
genomic: TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACCgtacgaactc ... tcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCG
EST: TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACC TGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGEST: gi|88370994|gb|CI595106.1|CI595106
genomic: TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACCgtacgaactc ... tcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTG
EST: TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACC TGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCG
genomic: TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACCgtacgaactc ... tcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCG
ttctttgctcagagtgttctcaatatttatggtttttcactgcgatcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA
aatatttatggttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgaactcactctcttctccccttaaaccatttctttgctcagagtgttctcaatatttatggtttttcactgcgatcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA