Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG

Basic information

species Oryza sativa
transcript LOC_Os01g64630.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G053284_T01 (Zea mays), 3'ss of exon 2
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                                ||| |||| |       | |    |  || ||  ||||||||   || ||||  |   | | ||  || ||||    |||| |||   || |||| ||||| |||||||| || || || ||||| |||||||| ||||| ||||||||||||||||||||||| || ||||| || |||||||| |||||||
--------------------------------gttcgttctcctgtccagcag---ccaatcct--tttgcctgtctattcattactg--atctaataaactgatgggatcttgatgccaaacagGCAGGTTTCGCTGGTGACGACGCGCCGAGGGCAGTCTTTCCCAGCATCGTAGGCAGGCCACGCCACACTGGCGTGATGGTGGGCATGGGCCAAAAGGATG

upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 2
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaata-catttgtagcacccaacgaattgatcatttcttcatgtg-gaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                               |  || || |||   ||    |||| |  |    ||    ||  || |  |  ||     | | ||||| ||  |  | |  | || || | | |||| || ||||||||||||||||| || |||||||| ||||| || ||||| ||| | || || || |||||||| |||||||| ||||| || |||||||
-----------------------------gttagtactttgca-gtttcttctgtt-atgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                                    ||| | ||     |||| ||    || |    ||         |  | |  ||  |  ||   | | ||  | | || || ||||| |||| || ||||||||||| ||||| || |||||||||||||| || ||||| ||| | || || || |||||||| |||||||| ||||| || |||||||
------------------------------------gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatt-tattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacga-attgat-catttcttcatgtgga-----atagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
|||||   || ||  |||||     | |   ||||   | |  | ||||       | | |     | ||| |||| |   |||  | |      | || ||||||  || | ||  | | ||       |||| |||||||| ||||||||||| || ||||| || || || |||||| | || || |||||||| |||||||| |||||||| ||||| ||||||||||
gttagaagatgttt-tgccaattgatgag--tgttt-cttgtgccattgaagaagactgttcactctgtgcttgctta-gtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG

upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttg-tagcaccca----acgaattgatcatt--tcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                                    ||| | ||  || |    ||    || | |||    ||||  | ||| || ||||    |    |  | |  ||| ||  | || || ||||| |||| || ||||||||||||||||| ||||||||||||||||| || ||||| ||| | || || ||||||||||| |||||||| ||||| || |||||||
------------------------------------gttagtac--ttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                     |  || | ||||||  ||   | | |  | ||| |   |  ||  ||||        ||||| ||||  ||   ||  ||  || |||| |  || |  || |||| |||||||||||||||||||| || || || || || || || ||||| ||  | ||  | |||||||||||||||||||||||||| ||||| ||||
-------------------gtga-gttagactgtttatttagatact--gtatggttctaaccttctttgtt-----gtacatgtgtaagact--actgatc-atgatttttgtatatt-aacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATG

upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 3
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattc--tcttttgcctgctaatac---atttgtagcacccaacgaattgatcatttcttcatgtgga-atagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                              |||||  |||   |      ||| | ||||||   | | |||  ||||  | |   | |  |       ||  |  |   ||| |  |  | |  |   |||| || ||||| ||||||||||| |||||||| || |||||||| ||||| ||  ||||| | |||||||||||||||||||| ||||| || || ||||
----------------------------gtctgttgtttctttcttgcttgatatgcagatttgttgtgttgtttgctgctcctcaaatgctcaatttgaataagctttccatgttatgctttatatgcagGCTGGATTTGCGGGTGATGATGCTCCCAGGGCAGTGTTTCCTAGTATTGTGGGTCGGCCAAGGCACACTGGTGTCATGGTTGGGATGGGTCAAAAAGATG

upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
gttagttaattttcctgccacgctgtaaaactg--ttagttcgcacaattgggatg--ttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                         | ||||||  |  ||| ||      | | ||  ||   ||||  |  |      |  ||  |||||        ||  ||| | |  | ||  |    |   |||| || ||||||||||||||||| || |||||||| || || || ||||| ||| | || || ||||| |||||||||||||| |||||||| |||||||
------------------------attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgt----tttcacacattaa-cgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG

upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S381_18V6.2 (Physcomitrella patens), 3'ss of exon 2
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                       | | |||     |   |   |   |    |||  || |  | ||   ||||    ||      |   ||     | | | ||   |  | |||||     |||||||||| || || |||||||| ||| | ||||| ||||| ||||| || ||  ||||| | ||||||||||| ||||| || ||||| |||||||| |
-------------------gtagtatcaaatctcca---caaccgtcttctgtgtctaggtcatgttggacctgtgtttaggccaatca-acatgtaggagtaata--tggtgcatgtaatgcagGCCGGTTTCGCGGGAGATGATGCTCCCCGCGCTGTGTTTCCCAGCATCGTCGGACGGCCAAGGCACACTGGTGTGATGGTGGGCATGGGACAGAAGGACG

upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 1
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                                                            | | ||  || | ||   | |  |||| |      |      |    | |  |          |||| || ||||| || || ||||| |||||||| || ||||| |||||||| ||| ||||    ||||| || ||||||||||| ||||| ||||||||||
-----------------------------------------------------------gtgcgctcctggc-gcggtttc--ttgtggattttgatccggggggtgtgttcttgc-------agGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

upper sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 1
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                                                            | | ||  || | || | | |  |||| |      |      |    | | ||          |||| || ||||| || || ||||| |||||||| || ||||| |||||||| ||| ||||    ||||| || ||||||||||| ||||| ||||||||||
-----------------------------------------------------------gtgcgctcctggc-gcgatttc--ttgtggattttgatccggggggtgtgtttttgc-------agGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88765176|gb|CI774270.1|CI774270
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88325069|gb|CI646485.1|CI646485
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|86906822|gb|CI291219.1|CI291219
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|86883922|gb|CI309176.1|CI309176
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88333746|gb|CI643778.1|CI643778
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88382416|gb|CI633274.1|CI633274
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88330770|gb|CI636778.1|CI636778
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|4714771|gb|AU055888.1|AU055888
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88302138|gb|CI667984.1|CI667984
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88742073|gb|CI765581.1|CI765581
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88356183|gb|CI627631.1|CI627631
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCCTGTCTTTCCTAGCATTGT
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGG-CTGTCTTTCCTAGCATTGT
EST: gi|88739038|gb|CI762546.1|CI762546
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88332231|gb|CI643648.1|CI643648
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88340571|gb|CI647525.1|CI647525
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|29613794|gb|CB618807.1|CB618807
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88825649|gb|CI776214.1|CI776214
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|13807445|gb|AU181959.1|AU181959
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88765332|gb|CI774426.1|CI774426
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88338591|gb|CI656892.1|CI656892
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88761231|gb|CI770787.1|CI770787
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88348547|gb|CI634142.1|CI634142
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88334081|gb|CI641132.1|CI641132
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88372104|gb|CI641739.1|CI641739
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88338364|gb|CI655553.1|CI655553
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88737227|gb|CI760735.1|CI760735
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88739136|gb|CI762644.1|CI762644
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|29658476|gb|CB654751.1|CB654751
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88341616|gb|CI641368.1|CI641368
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|33693145|gb|CF321384.1|CF321384
EST:     AAGAGGATATTCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88348888|gb|CI653932.1|CI653932
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88312389|gb|CI584912.1|CI584912
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88741930|gb|CI764435.1|CI764435
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88307092|gb|CI640526.1|CI640526
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88341382|gb|CI635580.1|CI635580
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88760322|gb|CI769878.1|CI769878
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
EST: gi|88404850|gb|CI583657.1|CI583657
EST:     AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA
genomic: AAGAGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaat ... tgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
                                     tttcttcat  CT-rich tract
     taatacattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG