1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcatagtagttgcacagagacatctcgttttgtcactgacaaacaaggcttgatcggtgtgatcatctcactttgtttttgctcaccttctcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGAGCTTCCTCCACACGTACCACGCAGCAGAGAAAGAAAGTCCCACGACTGA
species | Oryza sativa |
transcript | LOC_Os01g64170.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCG ATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGAEST: gi|29643278|gb|CB648285.1|CB648285
genomic: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCGgtaaggacag ... tcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGA
EST: CGTTCGACCCGTACTCGGCGCAGATGTTTTTGTCGGCGTCCAGATTGGCG ATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGAEST: gi|33680923|gb|CF309162.1|CF309162
genomic: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCGgtaaggacag ... tcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGA
EST: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCG ATGACGTCTGGGATAGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGEST: gi|33683525|gb|CF311764.1|CF311764
genomic: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCGgtaaggacag ... tcgcttgcagATGACGTCTGGGAT-GGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTG
EST: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCG ATGACGTCTGGGATGGGGGTTAGTTGTCCTACTCGGCGCATTATTCCTCTGEST: gi|13818898|gb|AB060278.1|AB060278
genomic: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCGgtaaggacag ... tcgcttgcagATGACGTCTGGGATGGGGGT-AGTTGTCCTACTCGGCGCATTATTCCTCTG
EST: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCG ATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGAEST: gi|58586249|gb|CF984557.1|CF984557
genomic: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCGgtaaggacag ... tcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGA
EST: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCG ATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGAEST: gi|58690098|gb|CK078785.1|CK078785
genomic: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCGgtaaggacag ... tcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGA
EST: CTCGTCGGCGT-CAGA-TGGCG ATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGAEST: gi|218499131|gb|FG953787.1|FG953787
genomic: CTCGTCGGCGTCCAGATTGGCGgtaaggacag ... tcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGA
EST: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCG ATGACGTCTGGGATGGGGGTACTTGTCCTAATCGACGCATTATTCCTCTGAEST: gi|218495470|gb|FG968953.1|FG968953
genomic: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCGgtaaggacag ... tcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGA
EST: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCG ATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGAEST: gi|218501299|gb|FG964613.1|FG964613
genomic: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCGgtaaggacag ... tcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGA
EST: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCG ATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATT
genomic: CGTTCGACCCGTACTCGGCGCAGATGTTCTCGTCGGCGTCCAGATTGGCGgtaaggacag ... tcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATT
aggcttgatcggtgtgatcatctcactttgtttttgctcaccttctcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGAGCTTCCTCCACACGTACCACGCAGCAGAGAAAGAAAGTCCCACGACTGA
tgctcac putative branch site (score: 2)
tctcactttgtttttg CT-rich tract
tttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatagtagttgcacagagacatctcgttttgtcactgacaaacaaggcttgatcggtgtgatcatctcactttgtttttgctcaccttctcgcttgcagATGACGTCTGGGATGGGGGTAGTTGTCCTACTCGGCGCATTATTCCTCTGAGCTTCCTCCACACGTACCACGCAGCAGAGAAAGAAAGTCCCACGACTGA
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