1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgatttcatagtttttcttaaaaaaaatcttatcctgaagaaattttgatgtaatcgctgtacgtaattgctcactggtaagctcgtcgtgtgttcgcagTGGACGTGGTGTCGGCGGCGCAGAAATTTGGTATCAACTATGGCCAGATCGCCAACAACCTGCCGGACCCGACGCAGGTGGCCGGCCTCCTCCAGTCGCT
species | Oryza sativa |
transcript | LOC_Os01g64170.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGCCTCCTGCTCCAGCTCCTTTCCTCAG TGGACGTGGTGTCGGCGGCGCAGAAATTTGGTATCAACTATGTGCCAGATCEST: gi|66914353|gb|CX101201.1|CX101201
genomic: CGGCCTCCTGCTCCAGCTCCTTTCCTCAGgtgagtaatc ... gtgttcgcagTGGACGTGGTGTCGGCGGCGCAGAAATTTGGTATCAACTATG-GCCAGATC
EST: CCGCGCCTCCTCGCTTCTGCTCGGCCTCCTGCTCCAGCTCCTTTCCTCAG TGGACGTGGTGTCGGCGGCGCAGAAATTTGGTATCAACTATGGCCAGATCG
genomic: CCGCGCCTCCTCGCTTCTGCTCGGCCTCCTGCTCCAGCTCCTTTCCTCAGgtgagtaatc ... gtgttcgcagTGGACGTGGTGTCGGCGGCGCAGAAATTTGGTATCAACTATGGCCAGATCG
ttgatgtaatcgctgtacgtaattgctcactggtaagctcgtcgtgtgttcgcagTGGACGTGGTGTCGGCGGCGCAGAAATTTGGTATCAACTATGGCCAGATCGCCAACAACCTGCCGGACCCGACGCAGGTGGCCGGCCTCCTCCAGTCGCT
tgctcac putative branch site (score: 2)
taatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgatttcatagtttttcttaaaaaaaatcttatcctgaagaaattttgatgtaatcgctgtacgtaattgctcactggtaagctcgtcgtgtgttcgcagTGGACGTGGTGTCGGCGGCGCAGAAATTTGGTATCAACTATGGCCAGATCGCCAACAACCTGCCGGACCCGACGCAGGTGGCCGGCCTCCTCCAGTCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC