1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttaattgcttgccctatagcttagctaattaataagctaaaaaccccagctttgattaagcagccggtgtgatgagctctgtgcgctactgcttgggcagGGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGAGGCCCTCATCCATGGCGCCAACGCCGGCGGCGTCGTCGATCCCGGCATG
species | Oryza sativa |
transcript | LOC_Os01g64020.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGCCCATGCTTCTCCTTCTGTTGCTGCTGCACCACCTGCCAGCTTCTT GGACTTCCAGCEST: gi|88827429|gb|CI777994.1|CI777994
genomic: CAAGCCCATGCTTCTCCTTCTGTTGCTGCTGCACCACCTGCCAGCTTCTTgtactgctct ... gcttgggcagGGACTTCCAGC
EST: CAAGCCCATGCTTCTCCTTCTGTTGCTGCTGCACCACCTGCCAGCTTCTT GGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGAEST: gi|88739150|gb|CI762658.1|CI762658
genomic: CAAGCCCATGCTTCTCCTTCTGTTGCTGCTGCACCACCTGCCAGCTTCTTgtactgctct ... gcttgggcagGGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGA
EST: CAAGCCCATGCTTCTCCTTCTGTTGCTGCTGCACCACCTGCCAGCTTCTT GGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGAEST: gi|88424544|gb|CI608130.1|CI608130
genomic: CAAGCCCATGCTTCTCCTTCTGTTGCTGCTGCACCACCTGCCAGCTTCTTgtactgctct ... gcttgggcagGGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGA
EST: CAAGCCCATGCTTCTCCTTCTGTTGCTGTTGCACCACCTGCCAGCTTCTT GGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGAEST: gi|88741011|gb|CI764519.1|CI764519
genomic: CAAGCCCATGCTTCTCCTTCTGTTGCTGCTGCACCACCTGCCAGCTTCTTgtactgctct ... gcttgggcagGGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGA
EST: CAAGCCCATGCTTCTCCTTCTGTTGCTGCTGCACCACCTGCCAGCTTCTT GGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGA
genomic: CAAGCCCATGCTTCTCCTTCTGTTGCTGCTGCACCACCTGCCAGCTTCTTgtactgctct ... gcttgggcagGGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGA
ccagctttgattaagcagccggtgtgatgagctctgtgcgctactgcttgggcagGGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGAGGCCCTCATCCATGGCGCCAACGCCGGCGGCGTCGTCGATCCCGGCATG
ctttgat putative branch site (score: 5)
tttgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaattgcttgccctatagcttagctaattaataagctaaaaaccccagctttgattaagcagccggtgtgatgagctctgtgcgctactgcttgggcagGGACTTCCAGCCTGCTGCCGCGGCAGCTGCCTACTTCGGCGAGCTGGAGGAGGCCCTCATCCATGGCGCCAACGCCGGCGGCGTCGTCGATCCCGGCATG
- - -tgcttgc
- - - - - - - - - - - - - - - - - agctaaa
- - - - - - - - - - - - - - - - - - - - - -ccccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctact