1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtataactcatcctgctccgccatggccgccatcgcggccatgcagctcgctcgatgaaggaatcatatcgagacgaatccgaaaggcagcgtgactgaatttctgaatttcctggtggtgggtttctgcagGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTTTCATGGGCAGCTGGA
species | Oryza sativa |
transcript | LOC_Os01g63770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCACGGCGGCTCCGTCTGGGACNCCTGGTTCAGCTGCGCCTCTAACCAG GTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGEST: gi|117224930|gb|CT845982.1|CT845982
genomic: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGgtataactca ... gtttctgcagGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATG
EST: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAG GTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGEST: gi|58665062|gb|CK053748.1|CK053748
genomic: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGgtataactca ... gtttctgcagGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATG
EST: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAG GTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGEST: gi|29646075|gb|CB651082.1|CB651082
genomic: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGgtataactca ... gtttctgcagGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATG
EST: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAG GTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGEST: gi|88316154|gb|CI620432.1|CI620432
genomic: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGgtataactca ... gtttctgcagGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATG
EST: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAG GCTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGAT
genomic: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCTAACCAGgtataactca ... gtttctgcagG-TCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGAT
atccgaaaggcagcgtgactgaatttctgaatttcctggtggtgggtttctgcagGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTTTCATGGGCAGCTGGA
tttctgc CT-rich tract
tgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataactcatcctgctccgccatggccgccatcgcggccatgcagctcgctcgatgaaggaatcatatcgagacgaatccgaaaggcagcgtgactgaatttctgaatttcctggtggtgggtttctgcagGTCGCGCAGGTGCTCCTGACGCTGCCGTACTCCTTCTCGCAGCTCGGGATGCTCTCGGGCGTGCTGCTGCAGCTGTTCTACGGTTTCATGGGCAGCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA