1 5' 3' | 2 5' 3' | 3 5' 3' |
...cagagatttcttttgctgtcttcctgatgaatacggccatacaccatagctgcttcctatttatattctttcattaatatgttttcttgtcttattgcagAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTGGGATTTGCTCCATATGAGAAACGAATCACTGAGCTTCTGAAGGTTGGAA
species | Oryza sativa |
transcript | LOC_Os01g62350.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGG AAAAGTACCAAGAGGGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTGEST: gi|86529019|gb|CI169225.1|CI169225
genomic: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGGgtaatttgtt ... cttattgcagAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTG
EST: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGG AAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTGEST: gi|88315091|gb|CI610150.1|CI610150
genomic: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGGgtaatttgtt ... cttattgcagAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTG
EST: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGG AAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTGEST: gi|87016064|gb|CI281807.1|CI281807
genomic: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGGgtaatttgtt ... cttattgcagAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTG
EST: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGG AAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTGEST: gi|88369733|gb|CI680402.1|CI680402
genomic: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGGgtaatttgtt ... cttattgcagAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTG
EST: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGG AAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTGEST: gi|58594171|gb|CF992479.1|CF992479
genomic: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGGgtaatttgtt ... cttattgcagAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTG
EST: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGG AAAAGTACCAAGAGGGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTGEST: gi|88969346|gb|CI382894.1|CI382894
genomic: ACGTCGTCACCAAGCGCGAGCTGCCACCTCGCCCGTCCGACCGCAAGGGGgtaatttgtt ... cttattgcagAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTG
EST: AGCTGCCACCTCGCCCGTCCGACCGCAAGAGG AAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTG
genomic: AGCTGCCACCTCGCCCGTCCGACCGCAAGGGGgtaatttgtt ... cttattgcagAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTG
atagctgcttcctatttatattctttcattaatatgttttcttgtcttattgcagAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTGGGATTTGCTCCATATGAGAAACGAATCACTGAGCTTCTGAAGGTTGGAA
cattaat putative branch site (score: 43)
ttttcttgtcttatt putative PPT
tatttatattctttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagagatttcttttgctgtcttcctgatgaatacggccatacaccatagctgcttcctatttatattctttcattaatatgttttcttgtcttattgcagAAAAGTACCAAGAGAGTGAATTTTGTCAGGGGCTTGATTAGGGAGGTTGTGGGATTTGCTCCATATGAGAAACGAATCACTGAGCTTCTGAAGGTTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - -tgctgtc
- - - - - - - - - - - cctgatg
- - - - - - - - - - - - - - - - - - -catacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcttg