1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgccaaaacttatctgcttcctcaataaatcgctatacttgtcataaaaattctccttgcttcaatatatatcttttgattaccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGTCTAAGAAGTCTGATCCTTGGACCTCAACAGTGGCAGTGCCTACCTCTA
species | Oryza sativa |
transcript | LOC_Os01g61720.10 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGEST: gi|88398384|gb|CI595785.1|CI595785
genomic: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGEST: gi|58692460|gb|CK081147.1|CK081147
genomic: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: CTTCAGCTCATCTGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGEST: gi|58667874|gb|CK056560.1|CK056560
genomic: CTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: CTGTCAAGAAAGTCTTCAGCTCATCTGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGEST: gi|58683061|gb|CK071748.1|CK071748
genomic: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: CTGTCAAGAAAGTCTTCAGCTCATCTGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGEST: gi|88360261|gb|CI611980.1|CI611980
genomic: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGEST: gi|29638610|gb|CB643619.1|CB643619
genomic: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGEST: gi|58683289|gb|CK071976.1|CK071976
genomic: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: CTGTCAAGAAAGTCTTCAGCTCATCTGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGEST: gi|58670378|gb|CK059064.1|CK059064
genomic: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: GGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGTGAAATGGCCATTTGGAAAEST: gi|58660985|gb|CK049665.1|CK049665
genomic: GGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAG-GAAATGGCCATTTGGAAA
EST: GAAAGTCTTCAGCTCATCTGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGGAATGGCCATTTGGAAAGEST: gi|58683800|gb|CK072487.1|CK072487
genomic: GAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: CTGTCAAGAAAGTCTTCAGCTCATCTGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
genomic: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
tacttgtcataaaaattctccttgcttcaatatatatcttttgattaccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGTCTAAGAAGTCTGATCCTTGGACCTCAACAGTGGCAGTGCCTACCTCTA
ttttgat putative branch site (score: 4)
ttcaatatatatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccaaaacttatctgcttcctcaataaatcgctatacttgtcataaaaattctccttgcttcaatatatatcttttgattaccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGTCTAAGAAGTCTGATCCTTGGACCTCAACAGTGGCAGTGCCTACCTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
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