1 5' 3' | 2 5' 3' | 3 5' 3' |
...agtacgtagtacgtgccatattaggtttagcgcattataagtatgccaactgaaattaacctaagcagcttattaatcaactaattattactgcgtgcagGGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCTGATGAGGTTGCTGTCAGCGAGCCTGGGGCTGGACGAGACGCGGTTCCAG
species | Oryza sativa |
transcript | LOC_Os01g61610.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAA GGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCTEST: gi|58693225|gb|CK081912.1|CK081912
genomic: GCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAAgtaagcacta ... ctgcgtgcagGGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCT
EST: GCCGCCAAGAGCCCGGCCAAATACTGGCCGGGCAATCCCGGCATCTGCAA GGAGGTGTCCGAGGAGEST: gi|58607588|gb|CK035621.1|CK035621
genomic: GCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAAgtaagcacta ... ctgcgtgcagGGAGGTGTCCGAGGAG
EST: GCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAA GGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCT
genomic: GCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAAgtaagcacta ... ctgcgtgcagGGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCT
ccaactgaaattaacctaagcagcttattaatcaactaattattactgcgtgcagGGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCTGATGAGGTTGCTGTCAGCGAGCCTGGGGCTGGACGAGACGCGGTTCCAG
aactaat putative branch site (score: 2)
ttattaatcaactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtacgtagtacgtgccatattaggtttagcgcattataagtatgccaactgaaattaacctaagcagcttattaatcaactaattattactgcgtgcagGGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCTGATGAGGTTGCTGTCAGCGAGCCTGGGGCTGGACGAGACGCGGTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA