1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagaaccttctttcacatgctctagtgaaaatgccttttgttttctcttctatgaattggtttgtgagttagacagataactttaagtcgaattctgcagGGGAAATGCAGTCACCGTGAAGAAGATGCTGGAAACCTCATTTCCTG
species | Oryza sativa |
transcript | LOC_Os01g61580.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCTCCGGCACCACCGTCGAGTTGAAGTTCTGGGCCTCCTGCTCTTATAG GGGAAATGCAGTCACCGTGAAGAAGATGCTGGAAACCTCATTTCCTGGTEST: gi|88739798|gb|CI763306.1|CI763306
genomic: GCCTCCGGCACCACCGTCGAGTTGAAGTTCTGCGCCTCCTGCTCTTATAGgtaaaaccat ... aattctgcagGGGAAATGCAGTCACCGTGAAGAAGATGCTGGAAACCTCATTTCCTGGT
EST: GCCTCCGGCACCACCGTCGAGTTGAAGTTCTGCGCCTCCTGCTCTTATAG GGGAAATGCAGTCACCGTEST: gi|86831226|gb|CI297495.1|CI297495
genomic: GCCTCCGGCACCACCGTCGAGTTGAAGTTCTGCGCCTCCTGCTCTTATAGgtaaaaccat ... aattctgcagGGGAAATGCAGTCACCGT
EST: GCCTCCGGCACCACCGTCGAGTTGAAGTTCTGCGCCTCCTGCTCTTATAG GGGAAATGCAGTCACCGTGAAGAAGATGCTGGAAACCTCATTTCCTGGTEST: gi|88739031|gb|CI762539.1|CI762539
genomic: GCCTCCGGCACCACCGTCGAGTTGAAGTTCTGCGCCTCCTGCTCTTATAGgtaaaaccat ... aattctgcagGGGAAATGCAGTCACCGTGAAGAAGATGCTGGAAACCTCATTTCCTGGT
EST: GCCTCCGGCACCACCGTCGAGTTGAAGTTCTGCGCCTCCTGCTCTTATAG GGGAAATGCAGTCACCGTGAA
genomic: GCCTCCGGCACCACCGTCGAGTTGAAGTTCTGCGCCTCCTGCTCTTATAGgtaaaaccat ... aattctgcagGGGAAATGCAGTCACCGTGAA
tcttctatgaattggtttgtgagttagacagataactttaagtcgaattctgcagGGGAAATGCAGTCACCGTGAAGAAGATGCTGGAAACCTCATTTCCTG
agataac putative branch site (score: 1)
ataactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaaccttctttcacatgctctagtgaaaatgccttttgttttctcttctatgaattggtttgtgagttagacagataactttaagtcgaattctgcagGGGAAATGCAGTCACCGTGAAGAAGATGCTGGAAACCTCATTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - -catgctc
- - - - - - - - - - - -agtgaaaa
- - - - - - - - - - - - - - - -tgccttt