1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgaaggaataatgtttctccagcctcttccattaaacattaactcttcttatatcttgatgctgatacggtttttgtttttgttctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAGATTTTGTTGTCTTGACGGAGCTTCTTATGATGGAGCTGCTGAAACTTG
species | Oryza sativa |
transcript | LOC_Os01g61500.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAEST: gi|86542293|gb|CI182499.1|CI182499
genomic: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
EST: GTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAEST: gi|86504097|gb|CI146730.1|CI146730
genomic: GTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
EST: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAEST: gi|86599345|gb|CI251303.1|CI251303
genomic: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
EST: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAEST: gi|88963710|gb|CI029483.1|CI029483
genomic: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
EST: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAEST: gi|86420400|gb|CI056389.1|CI056389
genomic: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
EST: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAEST: gi|218486310|gb|FG947933.1|FG947933
genomic: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
EST: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGGTTGAGGATAAAEST: gi|86835390|gb|CI347847.1|CI347847
genomic: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
EST: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAEST: gi|58685366|gb|CK074053.1|CK074053
genomic: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
EST: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGGTTGAGGATAAAEST: gi|218494744|gb|FG957721.1|FG957721
genomic: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
EST: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGGTTGAGGATAAAEST: gi|55410181|gb|CV722557.1|CV722557
genomic: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
EST: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGEST: gi|86842371|gb|CI335269.1|CI335269
genomic: GTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGG
EST: TGGCCGTGTAAGAGCTGAAGTTGACACACTCTCTGCCAAG GTATGTGATTTGGAGAAGAGTGTGTTTCCAGGGAGAAAGATTGAGGATAAA
genomic: TGGCCGTGTAAGAGCTGAAGTTGACAGACTCTCTGCCAAGgtgaaggaat ... ctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAA
taactcttcttatatcttgatgctgatacggtttttgtttttgttctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAGATTTTGTTGTCTTGACGGAGCTTCTTATGATGGAGCTGCTGAAACTTG
tttttgtttttgttct CT-rich tract
tttttgtttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaggaataatgtttctccagcctcttccattaaacattaactcttcttatatcttgatgctgatacggtttttgtttttgttctattaccagGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAGATTTTGTTGTCTTGACGGAGCTTCTTATGATGGAGCTGCTGAAACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT