1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacctaatgttgcagcaccgtttattggaccatcctgatctattatttacaatttaactggttatggtactgatgcaacacacattttattaatatgcagAGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCATCCCAACTTATGTAAACTAATCGGCTTTCACGCAAGAGAAGAATCTAATG
species | Oryza sativa |
transcript | LOC_Os01g60700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCCAAAGACCATTGAAGCAATAGTATCTCGGTTGCTCTCCTCCACTCAG AGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCATEST: gi|29684563|gb|CB680838.1|CB680838
genomic: ACCCAAAGACCATTGAAGCAATAGTATCTCGGTTGCTCTCCTCCACTCAGgtactgttct ... taatatgcagAGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCAT
EST: ACCCAAAGACCATTGAAGCAATAGTATCTCGGTTGCTCTCCTCCACTCAG AGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCAT
genomic: ACCCAAAGACCATTGAAGCAATAGTATCTCGGTTGCTCTCCTCCACTCAGgtactgttct ... taatatgcagAGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCAT
tttacaatttaactggttatggtactgatgcaacacacattttattaatatgcagAGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCATCCCAACTTATGTAAACTAATCGGCTTTCACGCAAGAGAAGAATCTAATG
tattaat putative branch site (score: 2)
ttttatt CT-rich tract
acacattttattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacctaatgttgcagcaccgtttattggaccatcctgatctattatttacaatttaactggttatggtactgatgcaacacacattttattaatatgcagAGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCATCCCAACTTATGTAAACTAATCGGCTTTCACGCAAGAGAAGAATCTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - atgttgc
- - - - - - -agcaccg
- - - - - - - - - - - - - - - catcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca