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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctacaatgctgtaccattaatgtcaataaaaatcccctataccttttctgtcgactgcctgtggcttgaacacttttgctttatttttcttatttccagATGGTTTGTTCAATCTGAAGTCAAATGCTCATACCATTATCAATGACCCCCTCCAATTTGAGAATTATGTAAAG

Basic information

species Oryza sativa
transcript LOC_Os01g59350.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33793551|gb|CF322658.1|CF322658
EST:     TGCGCAGTCTGCTGGATTCCGAATAGAAGATCTCGCTAATCTCAGTACAA                         ATGGTTTGTTCAATCTGAAGTCAAATGCTCATACCATTATCAATGACCCCC
genomic: TGCGCAGTCTGCTGGATTCCGAATAGAAGATCTCGCTAATCTCAGTACAAgtatgttggc ... ttatttccagATGGTTTGTTCAATCTGAAGTCAAATGCTCATACCATTATCAATGACCCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgtcgactgcctgtggcttgaacacttttgctttatttttcttatttccagATGGTTTGTTCAATCTGAAGTCAAATGCTCATACCATTATCAATGACCCCCTCCAATTTGAGAATTATGTAAAG
                          cacttttgctttattt  CT-rich tract
                             ttttgctttatttttc  TA-rich tract