1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttattgtgttgaaaacgtagtaatgcaacacatatcatcttgtcctatctcctcaatgtactcagatacgtatgcacaactcaatattgtatatgcacagGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAGCCCAAAGGAGCAGTTCCACCCTTCAACACCAACAGCTGGTGGGGCAAA
species | Oryza sativa |
transcript | LOC_Os01g57740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAG GTGTGTTGGCCGTGTATGANAAGCAGGTGGTGCCTGTGCACGTTGATGGTAEST: gi|88340389|gb|CI659595.1|CI659595
genomic: GAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGgtcagttcat ... atatgcacagGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTA
EST: GAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAG GTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAEST: gi|88831951|gb|CI014510.1|CI014510
genomic: GAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGgtcagttcat ... atatgcacagGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTA
EST: GAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAG GTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAEST: gi|218491307|gb|FG970293.1|FG970293
genomic: GAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGgtcagttcat ... atatgcacagGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTA
EST: GAAGGGCCTCAAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAA GTGTGTTGGCCGAGTATGAGEST: gi|86499874|gb|CI142507.1|CI142507
genomic: GAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGgtcagttcat ... atatgcacagGTGTGTTGGCCGTGTATGAG
EST: GAAGGNCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAG GTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTA
genomic: GAAGGGCCTCGAGCGGGAGAGGAGCGGAGACGCCAATCCTTCTACCACAGgtcagttcat ... atatgcacagGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTA
tatctcctcaatgtactcagatacgtatgcacaactcaatattgtatatgcacagGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAGCCCAAAGGAGCAGTTCCACCCTTCAACACCAACAGCTGGTGGGGCAAA
tcaatattgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattgtgttgaaaacgtagtaatgcaacacatatcatcttgtcctatctcctcaatgtactcagatacgtatgcacaactcaatattgtatatgcacagGTGTGTTGGCCGTGTATGAGAAGCAGGTGGTGCCTGTGCACGTTGATGGTAGCCCAAAGGAGCAGTTCCACCCTTCAACACCAACAGCTGGTGGGGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - tgttgaa
- - - - - - - - - - - - -caacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgca