1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttgagaaacggtttctcattctattgagttattgcctatgtatgatattctctctttatctatctgttgctgattgatactctactactcttatcttagTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGT
species | Oryza sativa |
transcript | LOC_Os01g57360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATAC TGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCEST: gi|29685466|gb|CB681741.1|CB681741
genomic: CCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACgtaaggcata ... cttatcttagTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCC
EST: CCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATAC TGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCEST: gi|29687577|gb|CB683852.1|CB683852
genomic: CCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACgtaaggcata ... cttatcttagTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCC
EST: CCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATAC TGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCC
genomic: CCCAGAGACCCCCTCTGGTTGGCCGTTTTCCCTGAGGGCACTGATTATACgtaaggcata ... cttatcttagTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCC
atattctctctttatctatctgttgctgattgatactctactactcttatcttagTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGT
ctcttatctt CT-rich tract
tttatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgagaaacggtttctcattctattgagttattgcctatgtatgatattctctctttatctatctgttgctgattgatactctactactcttatcttagTGAGAAGAAATGCATCAAGAGTCAAGAATATGCTTCGGAGCATGGTCTGCCTATACTTAAAAATGTTCTTCTTCCAAAGACAAAGGGGTTCCTTTGCTGT
- - - - - - - - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatt