1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgaacatgtacactgtgccagtattaaaaaatgcatctgcattccatttgtctagtcgcatgcacttgcatctaacgcttttgttttggtttctttcagCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCATTT
species | Oryza sativa |
transcript | LOC_Os01g56820.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTTTGGAACTGGCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAG CGATTTTTAGTTTTGTGTTGGAAGGCCATGCACTGAAGGCTATAGACCTGAEST: gi|40486859|gb|BX898175.1|BX898175
genomic: TGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGgtatttattc ... tttctttcagCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA
EST: TGGTTTGGAACTGCCTGTTGATTACACTGTGGATGTAGATAAGCGTAAAG CGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGAEST: gi|88428634|gb|CI599350.1|CI599350
genomic: TGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGgtatttattc ... tttctttcagCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA
EST: TGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAG CGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA
genomic: TGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGgtatttattc ... tttctttcagCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA
catttgtctagtcgcatgcacttgcatctaacgcttttgttttggtttctttcagCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCATTT
atctaac putative branch site (score: 19)
ttttggtttctttc putative PPT
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaacatgtacactgtgccagtattaaaaaatgcatctgcattccatttgtctagtcgcatgcacttgcatctaacgcttttgttttggtttctttcagCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGACAGAAGAGTTGGCACCTAACTTGCTAGAGAATGATATGGATTTGCATTT
- - -catgtac
- - - - - - - -gtgccag
- - - - - - - - - - - - - - - -atgcatc
- - - - - - - - - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttgca