1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggattgatgttcattagggttaactttcatcaaatattatgtattatatgaagtaaaatctcaaaggttcttctaattatgtgctatctttggtaatagTTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGGATCTCTCTATAATTGAAGCTGCACTTAGGACATCATCTAAGCTG
species | Oryza sativa |
transcript | LOC_Os01g55170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTG TTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGGEST: gi|2280557|gb|C25052.1|C25052
genomic: TACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTGgtaagtggca ... ttggtaatagTTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGG
EST: TACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTG TTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGGEST: gi|66915125|gb|CX101973.1|CX101973
genomic: TACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTGgtaagtggca ... ttggtaatagTTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGG
EST: TACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTG TTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGG
genomic: TACGGATGAGTTCCTGATTAAATTCGTGAAGAAGAACAAGCAGGGGTTTGgtaagtggca ... ttggtaatagTTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGG
tatatgaagtaaaatctcaaaggttcttctaattatgtgctatctttggtaatagTTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGGATCTCTCTATAATTGAAGCTGCACTTAGGACATCATCTAAGCTG
ttctaat putative branch site (score: 71)
ctatcttt putative PPT
ttctaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggattgatgttcattagggttaactttcatcaaatattatgtattatatgaagtaaaatctcaaaggttcttctaattatgtgctatctttggtaatagTTCCTATTGGAGTTATTGCCTCATTCAGAAGAATGAAGAAACTCAGTCAGGATCTCTCTATAATTGAAGCTGCACTTAGGACATCATCTAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - ttgatgt
- - - - - - - - - - - - - - catcaaa
- - - - - - - - - - - - - - - - - - - tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgc