1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttaatattgaagtagagtttcaatttataataatgtgctaatcatcatgaattacaaatttgaggcaaaagggacactgattcttttgtattggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGTCCCGTCAACTCAAATCTACAG
species | Oryza sativa |
transcript | LOC_Os01g55020.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGEST: gi|86599649|gb|CI253634.1|CI253634
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
EST: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGEST: gi|88445161|gb|CI552214.1|CI552214
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
EST: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGEST: gi|86888910|gb|CI307968.1|CI307968
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
EST: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTEST: gi|88745177|gb|CI768537.1|CI768537
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCT
EST: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGEST: gi|87022331|gb|CI282283.1|CI282283
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
EST: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGEST: gi|88744479|gb|CI767839.1|CI767839
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
EST: GTCCCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGEST: gi|88408344|gb|CI551473.1|CI551473
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
EST: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
tcatgaattacaaatttgaggcaaaagggacactgattcttttgtattggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGTCCCGTCAACTCAAATCTACAG
cactgat putative branch site (score: 1)
aattacaaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaatattgaagtagagtttcaatttataataatgtgctaatcatcatgaattacaaatttgaggcaaaagggacactgattcttttgtattggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGTCCCGTCAACTCAAATCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT