Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86424773|gb|CI063534.1|CI063534EST: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
EST:
gi|86888910|gb|CI307968.1|CI307968EST: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCT
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCT
EST:
gi|88745177|gb|CI768537.1|CI768537EST: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
EST:
gi|88744479|gb|CI767839.1|CI767839EST: GTCCCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAG CTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
genomic: GTCGCTCCTCGCTGCCCCTGCGTGCAGGAGCTTTGGCTGGCTCTCCGAAGgtaataattt ... attggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatgaattacaaatttgaggcaaaagggacactgattcttttgtattggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGTCCCGTCAACTCAAATCTACAGGTCTGGCAAGGTTTTAAGGAGCATCCA
cactgat putative branch site (score: 3)
aattacaaatttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaatattgaagtagagtttcaatttataataatgtgctaatcatcatgaattacaaatttgaggcaaaagggacactgattcttttgtattggcccagCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGTCCCGTCAACTCAAATCTACAGGTCTGGCAAGGTTTTAAGGAGCATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA