1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctccagctcaacttgaagagctcagtgggcatggaaatttttagttacactgtctcaggaatgcagaataatgaaatgtgctgtcttcaatcatatgcagGTGGACTAGAGACGAAGAGTGGCAAACATGTACCCAGACCTCTGACTTCGGGTGGATGGAAATGGCCAAGCCAGTGATGAATCTGTATACAGAAGCAACT
species | Oryza sativa |
transcript | LOC_Os01g54560.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCTCTTGTCCAGATCTGGGCATTGCAGCAGAGCATGGTTACTTCTTAAG GTGGACTAGAGACGAAGAGTGGCAAACATGTACCCAGACCTCTGACTTCGGEST: gi|86600818|gb|CI356575.1|CI356575
genomic: TCCTCTTGTCCAGATCTGGGCATTGCAGCAGAGCATGGTTACTTCTTAAGgtatgatatt ... tcatatgcagGTGGACTAGAGACGAAGAGTGGCAAACATGTACCCAGACCTCTGACTTCGG
EST: AGCATGGTTACTTCTTAAG GTGGACTAGAGACGAAGAGTGGCAAACATGTACCCAAGACCTCTGACTTCGEST: gi|1036854|gb|U37923.1|U37923
genomic: AGCATGGTTACTTCTTAAGgtatgatatt ... tcatatgcagGTGGACTAGAGACGAAGAGTGGCAAACATGTACCC-AGACCTCTGACTTCG
EST: TCCTCTTGTCCAGATCTGGGCATTGCAGCAGAGCATGGTTACTTCTTAAG GTGGACTAGAGACGAAGAGTGGCAAACATGTACCCAGACCTCTGACTTCGG
genomic: TCCTCTTGTCCAGATCTGGGCATTGCAGCAGAGCATGGTTACTTCTTAAGgtatgatatt ... tcatatgcagGTGGACTAGAGACGAAGAGTGGCAAACATGTACCCAGACCTCTGACTTCGG
tacactgtctcaggaatgcagaataatgaaatgtgctgtcttcaatcatatgcagGTGGACTAGAGACGAAGAGTGGCAAACATGTACCCAGACCTCTGACTTCGGGTGGATGGAAATGGCCAAGCCAGTGATGAATCTGTATACAGAAGCAACT
aataatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccagctcaacttgaagagctcagtgggcatggaaatttttagttacactgtctcaggaatgcagaataatgaaatgtgctgtcttcaatcatatgcagGTGGACTAGAGACGAAGAGTGGCAAACATGTACCCAGACCTCTGACTTCGGGTGGATGGAAATGGCCAAGCCAGTGATGAATCTGTATACAGAAGCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA