1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacaaacagcttttcagttctctcgtgagcttgttcttgaaacatgtttatacttgggattagaaacatggaaacaaactgatggaagcactgaactgaaaattactcttttgttgctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGCAGTGGAGGAAATGATAGCAGCCGTGAGTGAGAGGAAGAAAGGATGCTG
species | Oryza sativa |
transcript | LOC_Os01g53880.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGGAAGGAACTTEST: gi|29675173|gb|CB671448.1|CB671448
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGG-AAGGAACTT
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGEST: gi|699717|gb|D46008.1|D46008
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTG
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGNCACAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGEST: gi|4715020|gb|AU056137.1|AU056137
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTG
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAG GTTATAACGACCAGAAGCAGCAGGGCAAGGGCAGGATGTGGGAAGGAACTTEST: gi|29672642|gb|CB668917.1|CB668917
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGG-CAAGGGCAGGATGTGGGAAGGAACTT
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGEST: gi|29679027|gb|CB675302.1|CB675302
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTG
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGEST: gi|66913500|gb|CX100348.1|CX100348
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTG
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGEST: gi|58658772|gb|CK047452.1|CK047452
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTG
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAEST: gi|58695140|gb|CK083827.1|CK083827
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCA
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGEST: gi|29675175|gb|CB671450.1|CB671450
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTG
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGEST: gi|33655772|gb|CF278386.1|CF278386
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTG
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACGAAACAGAAG GTTATAACGACCAGAAGCAGCAGGCGAGGGCAGGGATGTGGGAAGGAACTT
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGG-ATGTGGGAAGGAACTT
gaaacaaactgatggaagcactgaactgaaaattactcttttgttgctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGCAGTGGAGGAAATGATAGCAGCCGTGAGTGAGAGGAAGAAAGGATGCTG
aactgat putative branch site (score: 3)
ctcttttgttgcttt putative PPT
aaaattactctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaaacagcttttcagttctctcgtgagcttgttcttgaaacatgtttatacttgggattagaaacatggaaacaaactgatggaagcactgaactgaaaattactcttttgttgctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGCAGTGGAGGAAATGATAGCAGCCGTGAGTGAGAGGAAGAAAGGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG