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gtatgatggtatcactatatgccttcaggtgttttaatagattctcttttttctgcatcagcatgaaaagtaaattttttaggacttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAACACCTGCTTCATCTGGAGCATCACATCTGTTGGAGAGAATGGCGTTCA
species | Oryza sativa |
transcript | LOC_Os01g53700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCEST: gi|88426420|gb|CI576662.1|CI576662
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGC
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTEST: gi|33684443|gb|CF312682.1|CF312682
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACT
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|88370337|gb|CI587727.1|CI587727
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGAG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAAEST: gi|117222072|gb|CT852607.1|CT852607
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|88411046|gb|CI606265.1|CI606265
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGEST: gi|88364211|gb|CI612160.1|CI612160
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTG
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|88392412|gb|CI612886.1|CI612886
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|33678525|gb|CF306764.1|CF306764
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|33795923|gb|CF323829.1|CF323829
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|27334460|gb|CA882911.1|CA882911
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|88359996|gb|CI608510.1|CI608510
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGGCATCTGTGGGACTGTATATTGACEST: gi|33681307|gb|CF309546.1|CF309546
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAG-CATCTGTGGGACTGTATATTGAC
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|88364616|gb|CI612431.1|CI612431
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGGTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGEST: gi|88430305|gb|CI567324.1|CI567324
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGG
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGGTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|163919795|gb|EG711485.1|EG711485
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTEST: gi|163922995|gb|EG712768.1|EG712768
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACT
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|88294602|gb|CI602322.1|CI602322
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCAC-ACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATAEST: gi|33795511|gb|CF323625.1|CF323625
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|88402185|gb|CI615028.1|CI615028
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|88364158|gb|CI610502.1|CI610502
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|33810480|gb|CF331128.1|CF331128
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|33677885|gb|CF306124.1|CF306124
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAEST: gi|40490205|gb|BX899810.1|BX899810
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAA
EST: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTG AGTCCAGCAGCATCTGTGGGACTTGTATATTGACTGTGGTTCAATATATGA
genomic: AAGTCACCACTCTCCCGAATGGCATCAAGATTGCTTCAGAAACGTCAGTGgtatgatggt ... ttatctgcagAGTCCAGCAGCATCTGTGGGACT-GTATATTGACTGTGGTTCAATATATGA
attctcttttttctgcatcagcatgaaaagtaaattttttaggacttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAACACCTGCTTCATCTGGAGCATCACATCTGTTGGAGAGAATGGCGTTCA
cttatct CT-rich tract
atgaaaagtaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatggtatcactatatgccttcaggtgttttaatagattctcttttttctgcatcagcatgaaaagtaaattttttaggacttatctgcagAGTCCAGCAGCATCTGTGGGACTGTATATTGACTGTGGTTCAATATATGAAACACCTGCTTCATCTGGAGCATCACATCTGTTGGAGAGAATGGCGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA