1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagcttctgtagtactttgactctgatgcgctttagacccgcagctggtatttgtggtgccctgttgtcaagtttttccttatcatgtatgtggccataacttattatactgattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAACATTGCCCTTTCTCTGAGATATGAGATCAATAGAGGTTTTGCAACCTTG
species | Oryza sativa |
transcript | LOC_Os01g53520.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCCTGGCCGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|88342993|gb|CI641519.1|CI641519
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGEST: gi|58682983|gb|CK071670.1|CK071670
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAG
EST: TCCCTGGCCGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAEST: gi|58673667|gb|CK062353.1|CK062353
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACA
EST: TCCCTGGCCGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|29663265|gb|CB659540.1|CB659540
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|218484106|gb|FG945297.1|FG945297
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCCGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCA-AGGACTTGACAGTAAAEST: gi|7608733|gb|AU090514.1|AU090514
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|29663264|gb|CB659539.1|CB659539
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|29688123|gb|CB684398.1|CB684398
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|163922879|gb|EG712730.1|EG712730
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: CCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|2311112|gb|C27267.1|C27267
genomic: CCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCTGTCCTCTTCCCCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|218485421|gb|FG945032.1|FG945032
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCCGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|58695411|gb|CK084098.1|CK084098
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCCGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|10109165|gb|AU065308.2|AU065308
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|58686008|gb|CK074695.1|CK074695
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCCGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|58682578|gb|CK071265.1|CK071265
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCCGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|10794862|gb|AU108828.1|AU108828
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: CCACTTTCATCCACAA GTCCCCTCCCAAACATTCCTGAGGTGAAAATTCCCAGAGGACTTGACAGTAEST: gi|58596037|gb|CK006565.1|CK006565
genomic: CCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCT-CCAAACATTCCTGAGGTGAAAATT-CCAGAGGACTTGACAGTA
EST: TCCCTGGCCGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAEST: gi|218483599|gb|FG956155.1|FG956155
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGA
EST: TCCCTGGCCGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|33678278|gb|CF306517.1|CF306517
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAAEST: gi|33693971|gb|CF322210.1|CF322210
genomic: TCCCTGGCTGTCCTCTTCCTCTGGTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
EST: GTCCAATGCCTCCACTTTCATCCACAA GTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
genomic: GTCCAATGCCTCCACTTTCATCCACAAgtgagcttct ... gattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAA
gtcaagtttttccttatcatgtatgtggccataacttattatactgattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAACATTGCCCTTTCTCTGAGATATGAGATCAATAGAGGTTTTGCAACCTTG
tactgat putative branch site (score: 200)
tttttt CT-rich tract
ataacttattatactg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttctgtagtactttgactctgatgcgctttagacccgcagctggtatttgtggtgccctgttgtcaagtttttccttatcatgtatgtggccataacttattatactgattttttagGTCCCCTCCAAACATTCCTGAGGTGAAAATTCCAGAGGACTTGACAGTAAACATTGCCCTTTCTCTGAGATATGAGATCAATAGAGGTTTTGCAACCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
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